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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTCTTgtaagtgggttaaatcggaagtttgggattagtgacgagtggttttctattggtgattcattaatcatcacagtccttggtcaggccagtaacattactg...

Basic information

species Zea mays
transcript AC197016.3_FGT003
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AC197016.3_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA20G28510.1 (Glycine max), 5'ss of exon 9
GTGCTTCTTGtaagtgggttaaatcggaagtttgggattagtgacgagtggttttctattggtgattcattaatcatcacagtccttggtcaggccagtaacattactg------------------------------------------------------------------------------------
||  | ||||| | |||  |||| || |||||||| |||||||| ||||||||| | |||||||||||||||||  |||| ||  |  ||||||  |  |   |                                                                                         
GTTTTCCTTGTTACTGGACTAAACCGTAAGTTTGGCATTAGTGATGAGTGGTTTGCAATTGGTGATTCATTAATTCTCACTGTTTTGAGTCAGgttatcattgtcttcttttactcattagttatatactactggctctggaaaacatacctgtcataccatctctgctttagttgttattaattagttttat

upper sequence: AC197016.3_FGT003 (Zea mays), 5'ss of exon 3
lower sequence: GLYMA10G39220.1 (Glycine max), 5'ss of exon 8
GTGCTTCTTGtaagtgggttaaatcggaagtttgggattagtgacgagtggttttctattggtgattcattaatcatcacagtccttggtcaggccagtaacattactg------------------------------------------------------------------------------------
||  | || || | |||  |||| ||||||||||| |||||||| ||||||||| | |||||||||||||||||  |||| ||  |  ||||||  |  |   |   |                                                                                     
GTTTTCCTCGTTACTGGACTAAACCGGAAGTTTGGCATTAGTGATGAGTGGTTTGCAATTGGTGATTCATTAATTCTCACTGTTTTGAGTCAGgttatcattgtctttttttactcattagttatatactactggctctggaaaacatacctgtcataccatctctgctttacttgttattaattaggtttat