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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTCGACTCACAGCGTAAACCTTAGAGTTATGGGGGATTCTGAGAGAGGAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggcagttcgctccgcctgagcttacaatttgcccatttggggaaagtggcaactggtgtctaatctaaaccttttgcgtttaacag

Basic information

species Zea mays
transcript GRMZM2G149802_T01
intron # 29
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149802_T02 (Zea mays), 5'ss of exon 29
lower sequence: LOC_Os01g64820.1 (Oryza sativa), 5'ss of exon 29
ATACTCGACTCACAGCGTAAACCTTAGAGTTATGGGGGATTCTGAGAGAGGAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggcagttcgctccgcctgagcttacaatttgcccatttggggaaagtggcaactggtgtctaatctaaaccttttgcgtt-taacag
|||||| || ||||| || ||||||||||| |||||||| ||||||||||||||  |||| || ||||||||||||||||| || | |||||| ||||||||||||    |          | | || ||||| |  |  |||||| |    |||        || |||| ||||| ||   | ||| ||||||
ATACTCAACGCACAGTGTGAACCTTAGAGTGATGGGGGACTCTGAGAGAGGAACCATCTGCCCCAACTACCCACGCTGCAATGGCCACCTAGTGAGACAGgtttgttaataaag------acttaagtttacagtgggttcatttgtgctttgtg--------tgactaa-ctaaatct---gtgttataacag

upper sequence: GRMZM2G149802_T02 (Zea mays), 5'ss of exon 29
lower sequence: GLYMA01G39430.1 (Glycine max), 5'ss of exon 30
ATACTCGACTCACAGCGTAAACCTTAGAGTTATGGGGGATTCTGAGAGAGGAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggcagttcgctccgcctgagcttacaatttgcccatttggggaaagtggc---aac----tggtgtc-----taatctaaaccttt--tgcgtttaacag
  |  | || |  ||  | | |||| |  |  | || |||||||||||||||||||| ||||| || || || |||||||| || || ||||| ||| ||||||  |  || |   ||       |  | |||||||    |||     |  |  ||   ||     ||||||      | | |||||  |||  |   |||  |||
GCATACAACGCGAAGTATCAGCCTTCGGTTGGTTGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGGCGTCTAGTTAGAAAGgtttcactcca-tgaacttgttgaaaattaacaatttataaattataatagtgaagccttaatgctttggtgttatgaattaactaaatatttatttgatttttcag

upper sequence: GRMZM2G149802_T02 (Zea mays), 5'ss of exon 29
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 5'ss of exon 28
ATACTCGACTCACAGCGTAAACCTTAGAGTTATGGGGGATTCTGAGAGAGGAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgt--ttgtcgg------cagttcgctcc-----------gcctgagcttacaatttgcccatttggggaaagtggcaactggtgtctaatctaaaccttttgcgtttaacag------------------
  || | ||  | ||  | |||||  | || || |||||||| ||||||||||| || |||||||||||||| ||||| || || || || |||||| ||||  |  ||         |  || |||               ||   || | |||| ||| |||        ||||| ||    |    |   || |||  | ||  ||                     
GCACACCACAAATAGTCTCAACCTGCGGGTGATTGGGGATTCCGAGAGAGGAACGGTTTGTCCTAACTACCCTCGCTGTAATGGCCGGCTTGTAAGAAAGgtattcatcaaatctaataactcactcttttatcaatatatttgccttttctattt-cccctttaatttctatggcatctttcattatttactaaacttgggtgtgaaatgtacttgggactgggactag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211239814|gb|FL461004.1|FL461004
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
EST: gi|74242012|gb|DT649926.1|DT649926
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
EST: gi|211101403|gb|FL454838.1|FL454838
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGCTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
EST: gi|211496413|gb|FL279203.1|FL279203
EST:     GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAG                         TACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT
genomic: GAACTGTCTGTCCTAACTACCCACGCTGCAACGGTCGCCTAGTAAGACAGgtttgtcggc ... cgtttaacagTACAAGGAGTCAGATCTGTACAGGCAACTATCATACTTTTGTTATGTACTT