Sequence
atgc intronic sequence ATGC exonic sequenceGAGATAAAAAGCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctggcctctttaccttcctttgcatttgtgttatgtgatggcaagaatgataaaatattattattatttttggtgtctag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 28
lower sequence: LOC_Os04g59494.2 (Oryza sativa), 5'ss of exon 28
GAGATAAAAAGCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctggcctctttaccttcctttgcatttgtgttatgtgatggcaagaatgataaaatattattattatttttggtgtctag
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GAGATAAAGAGTGAAGgt-tacacaatgaagtgtgccagattttgaatggatacaagcaggtata-------tatttttttttcttagggcgggtaaaacg-attcctcattgcggttctgtatc---------------------
upper sequence: GRMZM2G376731_T01 (Zea mays), 5'ss of exon 28
lower sequence: LOC_Os04g59494.4 (Oryza sativa), 5'ss of exon 28
GAGATAAAAAGCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctggcctcttt-----------------accttcctttgcatttgtgttatgtgatggcaagaatgataaaatattattat-tatttttggtgtctag
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GAGATAAAGAGTGAAGGT-TACACAATGAAGTGTGCCAGATTTTGAATGGATACAAGCAGgtatatatttttttttcttagggcgggtaaaacgattcctcattgcggttctgtatcggtaccgtacatgcaacaaactaacaaaaaacattttccatag----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31361458|gb|CD445815.1|CD445815EST: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAG CTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
genomic: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
EST:
gi|30306910|gb|CD001583.1|CD001583EST: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAG CTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
genomic: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
EST:
gi|111433443|gb|EE297760.1|EE297760EST: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAG CTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
genomic: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
EST:
gi|94474879|gb|EB703837.1|EB703837EST: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAG CTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
genomic: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
EST:
gi|76020992|gb|DT948162.1|DT948162EST: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAG CTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
genomic: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
EST:
gi|30306909|gb|CD001582.1|CD001582EST: GCGAAGGTCTTCCCAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAG CTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
genomic: GCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
170GAGATAAAAAGCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCAGACGTTGTGCAGAAATTAGCTAGATACGGAGTATGATGAGAAGCAAGCT
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
177GAGATAAAAAGCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCAGACGTTGTGCAGAAATTAGCTAGATACGGAGTATGATGAGAAGCAAGCT
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
223GAGATAAAAAGCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCAGACGTTGTGCAGAAATTAGCTAGATACGGAGTATGATGAGAAGCAAGCT
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
164GAGATAAAAAGCGAAGGTCTTCACAATGAGGTGTGCCAGATTCTGAATGGCTACAAGCAGgtaaagctgg ... tggtgtctagCTGCTTGGAAACAACGGTGGGTGGGAACAATGCATGGCCGCCCTGAAACCAGACGTTGTGCAGAAATTAGCTAGATACGGAGTATGATGAGAAGCAAGCT