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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCACAAACCCAAGGGGGATGCAGTGAAGCAGGAGGTTGATCGGAACGAGGACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagcttgattcgtttccgccattctatctttaccctcgtcctttaccgttcgattgttcgacaaaaaggttccaaccctttaccatctctcgccttcattttttcgccctatgaactacgttacataatgtaatgcag

Basic information

species Zea mays
transcript GRMZM2G168629_T01
intron # 28
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T01 (Zea mays), 5'ss of exon 28
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 28
GCCACAAACCCAAGGGGGATGCAGTGAAGCAGGAGGTTGATCGGAACGAGGACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagcttgattcgtttccgccattctatctttaccctcgtcctttaccgttcgattgttcgacaaaaaggttccaaccct-ttaccatct--ctcgccttcattttttcgccctatgaactacgttacataatgtaatgcag
  |||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || || |||||  | |||||  || |||||||||||||||||| |                 |  |||||| || |  |||     ||||    ||   | |||  || | |   ||  |||  |  |  |||||  ||||   | | |   |||||  ||                          
ATCACAAACCCAAGGGCGATGCAGTGAAGCAAGAGGTTGATCGCAATGAAGACATGATTCGAAGTGCTCTTCGAGCAATCGCTGCTCTAAGCCGCATAAGgtcagg---------------catcattctgtcctgccccgaacacttt----ttttctggtttaaccacac--ttttaactgtgctgtcatctttctcgttattagtgaatcgccacatc-------------------------

upper sequence: GRMZM2G168629_T01 (Zea mays), 5'ss of exon 28
lower sequence: PP1S35_209V6.1 (Physcomitrella patens), 5'ss of exon 28
GCCACAAACCCAAGGGGGATGCAGTGAAGCAGGAGGTTGATCGGAACGAGGACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaa---agcttga---ttcgtttc--cgccattctatctt----------taccctcgtcctttaccgttcgattgttcgacaaaaaggttccaaccctttaccatctctcgccttcattttttcgccctatg-aactacgttaca-taatgtaatgcag------------------------------------
  |||||| | ||    ||||| |||||||| |||||||| || || |||||||||||||| ||||||||  | |||||   |||||| |  || ||||||||      | ||| |    | ||| |  | | | |||   ||          ||      ||  |    |||      |||   ||   | ||  |   ||   |  | | |||  | ||  |  |   | | || || | |  | || || | ||||| |                                     
AACACAAAACAAAACCCGATGCTGTGAAGCAAGAGGTTGACCGTAATGAGGACATGATCCGAAGCGCTCTTCGTGCAATTGATTCTCTGAATCGGATAAGgtaggcctcaccttcagtgcttgttacaacacgagtctgcattggcggagcagtataaatatctctctgggttttccccttcaggaatctgcttagagagctagcctctatttcgtttgcaaatcatgagcttctgcaagttcacttcagtattttaatgaattttttagactttcttaacagtttctgtatctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430729|gb|DR811779.1|DR811779
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTTTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|32924248|gb|CF029060.1|CF029060
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|71430730|gb|DR811780.1|DR811780
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|5058666|gb|AI737142.1|AI737142
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|32907845|gb|CF012658.1|CF012658
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|78105807|gb|DV524225.1|DV524225
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|18170739|gb|BM340579.1|BM340579
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|4967010|gb|AI691788.1|AI691788
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|19770378|gb|BQ035099.1|BQ035099
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|211106237|gb|FL467711.1|FL467711
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|9952231|gb|BE638814.1|BE638814
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|78119496|gb|DV537880.1|DV537880
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTTTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|29544507|gb|CB604887.1|CB604887
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|37380534|gb|CF627085.1|CF627085
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|32924416|gb|CF029228.1|CF029228
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|120479953|gb|EH210674.1|EH210674
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|24769168|gb|CA404297.1|CA404297
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|8666088|gb|BE186904.1|BE186904
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|32923836|gb|CF028648.1|CF028648
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|4804473|gb|AI665343.2|AI665343
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|213175422|gb|FM193890.1|FM193890
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|78105806|gb|DV524224.1|DV524224
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTTTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|29543484|gb|CB605570.1|CB605570
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|18168777|gb|BM338617.1|BM338617
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|211405020|gb|FL469632.1|FL469632
EST:     GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|40335220|gb|CK369290.1|CK369290
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|113701110|gb|EE678614.1|EE678614
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|78543741|gb|DV621239.1|DV621239
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|32923972|gb|CF028784.1|CF028784
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|113703700|gb|EE681204.1|EE681204
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|33095774|gb|CF055768.1|CF055768
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC
EST: gi|32923875|gb|CF028687.1|CF028687
EST:     GACATGATCCGCAGCGCTCTCAGGGCTATATCTTCTCTAAGCCGCATAAG                         CGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGAC
genomic: GACATGATCCGCAGCGCTCTCAGGGCAATATCTTCTCTAAGCCGCATAAGgtaaaaagct ... tgtaatgcagCGGCAGCGACTACAGCATACGGTTCAAGAATCTGATGAACAAGATAACGGC