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AGATCCTTTTTTGATGGTTATCCGTGAAGTTGAGACTGCTGCAGAGGTACTGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatattcttatatgattactatttcttatggaatggatttacccagagcctccccctctctaccgtcttctttcttttaccctttcagtgtctttt...
species | Zea mays |
transcript | GRMZM2G014805_T01 |
intron # | 28 |
splice site | 5' |
intron type | U2 |
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|211029627|gb|FL157472.1|FL157472
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|18654871|gb|BM499676.1|BM499676
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|18654872|gb|BM499677.1|BM499677
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|211029629|gb|FL157474.1|FL157474
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|87152609|gb|DY397398.1|DY397398
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|60400188|gb|DN232995.1|DN232995
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|60400323|gb|DN233130.1|DN233130
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|211029628|gb|FL157473.1|FL157473
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGRATGAGGACTTCTCMAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|76019060|gb|DT946230.1|DT946230
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|76019059|gb|DT946229.1|DT946229
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|211029631|gb|FL157476.1|FL157476
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|18963174|gb|BM660282.1|BM660282
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|211029630|gb|FL157475.1|FL157475
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|18661897|gb|BM501640.1|BM501640
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACTEST: gi|94476779|gb|EB705737.1|EB705737
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
EST: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAG TGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
genomic: TGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatatt ... atttgatcagTGGAAGCTTGCATTCATATCCATGAACCGGCCAGAGTACCTCCAGGACACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATCCTTTTTTGATGGTTATCCGTGAAGTTGAGACTGCTGCAGAGGTACTGGAGCGCATCCAAAGAAAACTTAGAGTTCCGGATGAGGACTTCTCCAAGgtaatatattcttatatgattactatttcttatggaatggatttacccagagcctccccctctctaccgtcttctttcttttaccctttcagtgtctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctcccc