1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgacagtgcactcagcactttgtacctcttgcagatctgcaaacctgacatccgataacctcccctttcttttgcttgcag
species | Zea mays |
transcript | GRMZM2G440916_T02 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
EST: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCA GTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGCEST: gi|211323882|gb|FK953778.1|FK953778
genomic: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGC
EST: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCA GTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGCEST: gi|32930688|gb|CF035500.1|CF035500
genomic: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGC
EST: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCA GTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTEST: gi|211323885|gb|FK953781.1|FK953781
genomic: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGT
EST: AAAATGTTTCAGCAGCTTGTCAGAGCTGSCAGCCAAATTAACACGCCGCA GTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGCEST: gi|33092036|gb|CF052030.1|CF052030
genomic: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGC
EST: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCA GTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTEST: gi|211323884|gb|FK953780.1|FK953780
genomic: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGT
EST: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCA GTGCTTCCTTCTGACGCCCAEST: gi|9732498|gb|BE511250.1|BE511250
genomic: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCA
EST: CCAAATTAACACGCCGCA GTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGCEST: gi|78075393|gb|DV503827.1|DV503827
genomic: CCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGC
EST: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCA GTGCTTCTTTTTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGC
genomic: AAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgaca ... ttgcttgcagGTGCTTCCTTCTGACGCCCAAGCTCCTACCTGATCTGGAGTACAGCGATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTGCCAGCCAAATTAACACGCCGCAgttagtgacagtgcactcagcactttgtacctcttgcagatctgcaaacctgacatccgataacctcccctttcttttgcttgcag
- - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - AGCTGC