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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGGATGCTACTGCTAATTTCTGGCGCCATATGCGGTGCCCAAGATGCCTAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAGgtgaaaatcaatttaatatgcatggcctagaatttaagttgattgaaactgaactttatgttgtcctccatgtgtag

Basic information

species Zea mays
transcript GRMZM2G149802_T01
intron # 27
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166579892|gb|EG316364.1|EG316364
EST:     CTCGCCAACCAG                         ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
genomic: CTCGCCAACCAGgtgaaaatca ... ccatgtgtagATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
EST: gi|32943017|gb|CF047836.1|CF047836
EST:     TAGATAATACTTTTGAGTCCAAAATTTCCCCTTCTATGCTCGCCAACCAG                         ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
genomic: TAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAGgtgaaaatca ... ccatgtgtagATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
EST: gi|74242012|gb|DT649926.1|DT649926
EST:     TAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAG                         ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
genomic: TAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAGgtgaaaatca ... ccatgtgtagATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
EST: gi|211496413|gb|FL279203.1|FL279203
EST:     CAAATTTTCCCCTTCTATGCTCGCCAACCAG                         ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
genomic: CAAATTTTCCCCTTCTATGCTCGCCAACCAGgtgaaaatca ... ccatgtgtagATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
EST: gi|32942865|gb|CF047684.1|CF047684
EST:     TAGATAATACTTTTGAGTCCAAAATTTCCCCTTCTATGCTCGCCAACCAG                         ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
genomic: TAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAGgtgaaaatca ... ccatgtgtagATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
EST: gi|32942815|gb|CF047634.1|CF047634
EST:     TAGATAATACTTTTGAGTCCAAAATTTCCCCTTCTATGCTCGCCAACCAG                         ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
genomic: TAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAGgtgaaaatca ... ccatgtgtagATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
EST: gi|74242013|gb|DT649927.1|DT649927
EST:     TAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAG                         ATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG
genomic: TAGATAATACTGTTGAGTCCAAATTTTCCCCTTCTATGCTCGCCAACCAGgtgaaaatca ... ccatgtgtagATGAAAAGACAGGCTGATAATTTCATTAGTCTATATTATAAAGGTTTGCAG