1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAGgtacagctaacgcattgtttccgttgctttgcgtttctactgatttcacaaatcctttttttgtgatctgtaatgtgtattatgtgctcattgtgcag
species | Zea mays |
transcript | GRMZM2G018508_T02 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
EST: GACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAG AACCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAGEST: gi|40334440|gb|CK368510.1|CK368510
genomic: GACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAGgtacagctaa ... cattgtgcagAACCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAG
EST: CAATTAATCAG AATCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAGEST: gi|67020734|gb|CO449483.1|CO449483
genomic: CAATTAATCAGgtacagctaa ... cattgtgcagAACCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAG
EST: GACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAG AATCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAGEST: gi|37376055|gb|CF624526.1|CF624526
genomic: GACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAGgtacagctaa ... cattgtgcagAACCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAG
EST: CAATTAATCAG AATCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAGEST: gi|4753524|gb|AI657434.1|AI657434
genomic: CAATTAATCAGgtacagctaa ... cattgtgcagAACCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAG
EST: GACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAG AATCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAGEST: gi|5871166|gb|AW017637.1|AW017637
genomic: GACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAGgtacagctaa ... cattgtgcagAACCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAG
EST: GACTGGAACATCCAGACCCAGCTCCTAGGAAGGCNCACACAATTAATCAG AATCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAG
genomic: GACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAGgtacagctaa ... cattgtgcagAACCGGCATTCATTTGAGAGACCTGTAAAAATTTATAACTAGGCATGATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACACAGCTCCTAGGAAGGCACACACAATTAATCAGgtacagctaacgcattgtttccgttgctttgcgtttctactgatttcacaaatcctttttttgtgatctgtaatgtgtattatgtgctcattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC