1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
TGGAAGTTTGCATACATTTCACTTGGTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaagcttttattttatatctattcgctgaagtatttattgtctatatctttatcttgccagcgtcttaactttatttctcttgacatctgacctttttaag
species | Zea mays |
transcript | GRMZM2G018508_T01 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
EST: GACTATTTT-AAGATTCAGATACTGTAGCTTT-AAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|67016472|gb|CO445221.1|CO445221
genomic: GACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|6020900|gb|AW065828.1|AW065828
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|88751977|gb|DY536118.1|DY536118
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|67015347|gb|CO444096.1|CO444096
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|67015345|gb|CO444094.1|CO444094
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|50332269|gb|CO527395.1|CO527395
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|32857251|gb|CD996932.1|CD996932
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|32943477|gb|CF048296.1|CF048296
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGACEST: gi|74238602|gb|DT646516.1|DT646516
genomic: GTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
EST: CCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAG AGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
genomic: CCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaa ... cctttttaagAGAAACATGTATGGAGCTTGGGAGCAGTATCTTGGACTGGAACATCCAGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAAGTTTGCATACATTTCACTTGGTCGTCCAGACTATTTTGAAGATTCAGATACTGTAGCTTTAAAATTTCAGgtacgatcaagcttttattttatatctattcgctgaagtatttattgtctatatctttatcttgccagcgtcttaactttatttctcttgacatctgacctttttaag
- - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - TGAAGA