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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcag

Basic information

species Zea mays
transcript GRMZM2G440916_T02
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
lower sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 26
GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac--tgaattgcttcatttctcca----------actgt------atgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcag
|||||||| || || |||||| |||| ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||  ||||  | |   | ||   ||| | |           ||||      |||| | |||  ||||  | | |||     |||   |    ||   |||||  |||||
GAGCGATCAGTTTCAACCATCCTGTACCTTGTATCACTTCAAGATCTTACCAACTGCCCCTTTCGGGTCGTTGATGAGATAAATCAAGgcaagccaaccctcacaagtttttgttccctatgcactcaatgctgttataaaatgattactagtttgttgaagcattacaaaggt---aactgtttccccgaaattgcag

upper sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
lower sequence: GLYMA20G34020.1 (Glycine max), 5'ss of exon 27
GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcag
|| || || || || || ||  | |||||||| || |||||||||||||| |||||||| ||| | || ||||||||||| || ||||||      ||||  |      | ||||     |  ||     | | ||  | ||   | ||   | | ||  ||  || ||| |         
GAACGCTCAGTTTCAACTATTGTTTATCTTGTTTCCCTTCAAGATCTTACAAACTGCCCATTTAGAGTCGTTGATGAGATCAACCAAGgtg-tgttactgtttgaagaaaattctt----tccattgacaccagctc-tctaaagactgtctttgactg-tgtttttatcag---------

upper sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
lower sequence: AT5G15920.1 (Arabidopsis thaliana), 5'ss of exon 2
------------GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcag
            ||||| ||||| || || ||| | || || || || ||||||||||| || ||||| |||||  |||||||||||||||| ||||||||||| | |    || || ||  ||| |  ||    |  ||||         ||  ||    ||    |  ||   || |||  |  | |||||
CAATCTGGAGGAGAGCGTTCTGTCTCAACTATCCTTTACCTCGTCTCTCTTCAAGATCTGACAAACTGTCCTTTCAGGGTTGTTGATGAGATTAATCAAGgtaa-aaagtgtaaatgttt--tttttttaatgtaaaaactgtctcgaaacattagt-caaagtctcttaaaaatatacatttgcttgtgcag

upper sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
lower sequence: Vv13s0064g00180.t01 (Vitis vinifera), 5'ss of exon 26
GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaa--cacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtatt-gaggtgg--tctaatgcattcatccgaatatgcag
||||| || ||  | || ||  |||||||||| || || |||||||| || |||||||||||| |||| ||||||||||||||||||||| |   | ||   ||| |  | ||| || |  |  |   |     ||  | ||  |   ||  || ||   | || |   ||  |||   ||     
GAGCGCTCAGTTGCAACTATTCTGTATCTTGTTTCTCTACAAGATCTCACAAACTGCCCTTTTAGGGTGGTTGATGAGATAAATCAAGgtgagttaaaatataatggtgttattgcttcgtcattgcaa-----aatatatactgcctttcaagatgacttttattttgtttttccccctag----

upper sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
lower sequence: EFJ24458 (Selaginella moellendorffii), 5'ss of exon 25
GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcag
|| || || || || || ||  | || ||||| ||||| ||||| |||||| |||| || ||||| ||||| ||||||||||| ||||||| |   |||||  |   |  || |    | | | | || | |   |||   ||                                      
GAACGCTCGGTGTCAACTATACTCTACCTTGTCTCACTCCAAGACCTTACCCACTGTCCGTTTCGTGTTGTGGATGAGATAAACCAAGgtatcctgactgagatttctggttgc---gaatctttaacaggt---ttgatcag--------------------------------------

upper sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 26
lower sequence: EFJ13183 (Selaginella moellendorffii), 5'ss of exon 24
GAGCGATCTGTATCGACCATCTTGTATCTTGTGTCACTTCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaactgaattgcttcatttctccaactgtatgactgctaacttgtataggtattgaggtggtctaatgcattcatccgaatatgcag
|| || || || || || ||  | || ||||| ||||| ||||| |||||| |||| || ||||| ||||| ||||||||||| ||||||| |    ||||   ||||  |   | | | | | | || | |   |||   ||                                      
GAACGCTCGGTGTCAACTATTCTCTACCTTGTCTCACTCCAAGACCTTACCCACTGTCCGTTTCGTGTTGTGGATGAGATAAACCAAGgtatcctggctga---gctttctggttgcgaatctttaacaggt---ttgatcag--------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32794483|gb|CD946719.1|CD946719
EST:     GATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAG                         GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
genomic: GATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac ... gaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
EST: gi|33097205|gb|CF057165.1|CF057165
EST:     GAGATAAATCAAG                         GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
genomic: GAGATAAATCAAGgtaacacaac ... gaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
EST: gi|32930688|gb|CF035500.1|CF035500
EST:     TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAG                         GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
genomic: TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac ... gaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
EST: gi|211323885|gb|FK953781.1|FK953781
EST:     TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAG                         GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
genomic: TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac ... gaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
EST: gi|33092036|gb|CF052030.1|CF052030
EST:     TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAG                         GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
genomic: TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac ... gaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
EST: gi|211323884|gb|FK953780.1|FK953780
EST:     TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAG                         GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
genomic: TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac ... gaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
EST: gi|78075393|gb|DV503827.1|DV503827
EST:     TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAG                         GAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG
genomic: TCAAGATCTTACCAACTGCCCTTTTCGGGTTGTTGATGAGATAAATCAAGgtaacacaac ... gaatatgcagGAATGGACCCCATAAACGAGAGGAAAATGTTTCAGCAGCTTGTCAGAGCTG