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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAGCTGCCTTTGAATGTGTGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacggtttcttcacttgtgatcaagtcaaccatttggtatagtcctggaaaattcatgacttatcaaatgtgataccatctgtagtcatttagag...

Basic information

species Zea mays
transcript GRMZM2G168629_T01
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 26
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 26
AAAGCTGCCTTTGAATGTGTGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacggtttcttcacttg--tgatcaagtcaaccatttggtatagtcctggaaaattcatgacttatcaaatgtg-ataccatctgtagtcatttagag
|||||||||||||||||||||||||| ||  |||| || ||||||||||||||||| ||||| || || || || ||||||||||| ||||||||||||||||||||| ||| |   |  |   | ||||  |  |||       ||     |  |       |        | ||||  |     | |||| || || | | 
AAAGCTGCCTTTGAATGTGTGGATACATTGCTGGATAGCTGTCTTGATCAAGTGAACCCATCATCATTTATCGTTCCTTTCCTCTTATCTGGTTTAGGTGgtaagtactgttacactaaataatttatcactttgaccg---aacattccgtttaatccactgtagtaatatagatgtataggtggtgtgtaatctttaaaac

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 26
lower sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 26
AAAGCTGCCTTTGAATGTGTGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacggtttcttcacttgtgatcaagtcaaccatttggtatagtcctggaaaattcatgacttatcaaatgtgataccatctgta-gtcatttagag--
|| || || ||||||||||| || || ||| |||| ||||| |||||||||||||| || || || |||||||| ||||  ||    |||||||| | |||| || |    || |   ||| |   ||     ||   |   || | |  | |    |   | ||||||| ||   |  |||   || |    | ||  |   
AAGGCGGCTTTTGAATGTGTAGACACATTACTGGATAGTTGCCTTGATCAAGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGgtgagcattagttataatcttttctcca---tcactgctgattacatttgttggttctgattcacttatctaaaaggggacccagtgcacaatacttccacct

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 26
lower sequence: AT2G02560.2 (Arabidopsis thaliana), 5'ss of exon 26
AAAGCTGCCTTTGAATGTGTGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacggtttcttcacttgtgatcaagtcaaccatttggtatagtcctggaaaattcatgacttatcaaatgtgataccatctgtagtcatttagag
||||| || ||||| ||||||  |||| |  ||||||| || ||||||||||| ||||| || || |||||||| |||||||||   || || ||||  ||  |||    ||  |   | | |||| |    ||  | |   ||  ||   |  |  ||| |   ||| |   | | | |  |||| |  | ||  ||  
AAAGCAGCTTTTGAGTGTGTGTTTACTCTGGTGGACAGCTGCCTTGATCAAGTTAATCCGTCTTCTTTCATTGTTCCTTTCCTCAAATCCGGATTAGAAGgcgagtgtt-ttggtcttcctctgatga---taattaatc--tactgtttagccattttcttttattagct--tataacataatctttgtttatgcag--

upper sequence: GRMZM2G168629_T04 (Zea mays), 5'ss of exon 26
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 27
AAAGCTGCCTTTGAATGTGTGGATACTTTATTGGACAGTTGTCTTGATCAAGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacg-gtttcttcacttgtgatcaagtcaaccatttggtatagtcc--tggaaaattcatgacttatcaaatgtgataccatctgtagtcatttagag--------------------------------------------------------------------------------
||||| || ||||||||||| || ||  |  | |||||||||||||||||||||||||| || || |||||||| || |  |||   || ||||| | ||||  ||     ||| || | || | |  |   || |  | |  | || | |  |  |   ||     | | |         |    | |    ||||||                                                                                    
AAAGCAGCTTTTGAATGTGTAGACACACTGCTAGACAGTTGTCTTGATCAAGTGAATCCTTCATCTTTCATTGTTCCCTATCTCAAATCCGGTTTGGATGgtgcgtttttatttttttatttttaacaagaccatcattcttttttacttcactttatttttttcacccttttccccccactttagtttagtttcatttcagctgctaaaagttatttcatgtttctatacttgaagtttagtttatcacttcctgaactgaaattgatttggctcttctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71430729|gb|DR811779.1|DR811779
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|32924248|gb|CF029060.1|CF029060
EST:     ACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: ACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|71430730|gb|DR811780.1|DR811780
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|5058666|gb|AI737142.1|AI737142
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|32907845|gb|CF012658.1|CF012658
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|18170739|gb|BM340579.1|BM340579
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|4967010|gb|AI691788.1|AI691788
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|211106237|gb|FL467711.1|FL467711
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|166643623|gb|EG090562.1|EG090562
EST:     GTGAATCCATCGTCCTTCTATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTAT
genomic: GTGAATCCATCGTCCTTC-ATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTAT
EST: gi|78119496|gb|DV537880.1|DV537880
EST:     CTTTCCTCTTGTCTGGTTTAGGGG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: CTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|166698756|gb|EG168762.1|EG168762
EST:     GTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGC
genomic: GTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGC
EST: gi|29544507|gb|CB604887.1|CB604887
EST:     AG-GAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGGTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|32924416|gb|CF029228.1|CF029228
EST:     TACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: TACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|120479953|gb|EH210674.1|EH210674
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|24769168|gb|CA404297.1|CA404297
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|32923836|gb|CF028648.1|CF028648
EST:     ACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: ACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|4804473|gb|AI665343.2|AI665343
EST:     AGTGAATCCATCGTCNTTCATTGTACCTTTCNTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|211405020|gb|FL469632.1|FL469632
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|40335220|gb|CK369290.1|CK369290
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|78543741|gb|DV621239.1|DV621239
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|32923972|gb|CF028784.1|CF028784
EST:     ACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTGGCAG
genomic: ACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|113703700|gb|EE681204.1|EE681204
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|50322915|gb|CO518041.1|CO518041
EST:     AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: AGTGAATCCATCGTCCTTCATTGTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|33095774|gb|CF055768.1|CF055768
EST:     ACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: ACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
EST: gi|32923875|gb|CF028687.1|CF028687
EST:     GTACCTTTCCTCTTGTCTGGTTTAGGTG                         ACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG
genomic: GTACCTTTCCTCTTGTCTGGTTTAGGTGgtaagtacgg ... ctttctgcagACCATTACGACGTGAAAATGCCTTGCCATTTGATTCTATCAAAGCTAGCAG