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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTCTTGTGTCGTTACAGTCTTCAATGTATGTCCGTACGAAGTGTCTATAGAAATCCCTGATCTTGCATCACTGCGGCTTCAGTTGCATCCAGTGCAGgtaactaatcatacacatttgtttcagttgcatcaatcatactctcatcaacaataagaagctgtcacaggctcacagcattgttctgttaccattgtac...

Basic information

species Zea mays
transcript GRMZM2G158043_T02
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T03 (Zea mays), 5'ss of exon 25
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 5'ss of exon 17
ATTCTCTTGTGTCGTTACAGTCTTCAATGTATGTCCGTACGAAGTGTCTATAGAAATCCCTGATCTTGCATCACTGCGGCTTCAGTTGCATCCAGTGCAGgtaactaatcatacacatttgtttcagttgcatca--atcatactctcatcaacaataagaagctgtcacagg-----ctcacagcattgttct--gttaccattgtac-
 ||||||| |||||| ||  |||||||||| |||||  ||||||||||||| ||||||| |||||| || ||  || ||||| | ||||||||  | |||||||       | | || ||  || |||| |||||  || |||| ||| | |  | |    || |||   ||      ||| || ||||||  |  ||  ||   || | 
CTTCTCTTATGTCGTGACGATCTTCAATGTCTGTCCACACGAAGTGTCTATTGAAATCCATGATCTCGCTTCGTTGGGGCTTGAATTGCATCCTATTCAGgtaa-------tgctcagtt--tttagtttcatcaagatgatac-ctccttagtactttccagttgttgaagtgttgtctctcatcattgtatttggtgtcccaagtgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32868337|gb|CF008019.1|CF008019
EST:     TAGAAATCCCTGATCTCGCATCACTGCGGCTTCAGTTGCATCCAGTGCAG                         GTGAATTCATCGGATGCGTTAGCCAGGCAGTCTGCGTACGACCCCGCCACA
genomic: TAGAAATCCCTGATCTTGCATCACTGCGGCTTCAGTTGCATCCAGTGCAGgtaactaatc ... aaaatttcagGTGAATTCATCGGATGCGTTAGCCAGGCAGTCTGCGTACGACACCGCCACA
EST: gi|32867450|gb|CF007132.1|CF007132
EST:     TAGAAATCCCTGATCTCGCATCACTGCGGCTTCAGTTGCATCCAGTGCAG                         GTGAATTCATCGGATGCGTTAGCCAGGCAGTCTGCGTACGACCCCGCCACA
genomic: TAGAAATCCCTGATCTTGCATCACTGCGGCTTCAGTTGCATCCAGTGCAGgtaactaatc ... aaaatttcagGTGAATTCATCGGATGCGTTAGCCAGGCAGTCTGCGTACGACACCGCCACA