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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGATATAGGTCTTTCAATGGGCATTTCCGGGACAGAAGTTGCTAAAGAAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgtttggtagaattatccaagaggacctaactgagttcagcactgattttctttccttgtaaaaaataattccacttgtttggagttcacacattga...

Basic information

species Zea mays
transcript GRMZM2G132712_T01
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132712_T03 (Zea mays), 5'ss of exon 27
lower sequence: LOC_Os08g40530.1 (Oryza sativa), 5'ss of exon 11
GCCGATATAGGTCTTTCAATGGGCATTTCCGGGACAGAAGTTGCTAAAGAAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgttt------ggtagaattatccaagaggacctaactgagttcagcactgattttctttccttgtaaaaaataattccacttgtttggagttcacacattga
|||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||  ||||||| |||||||| |||||||||||      |    || ||| |  ||  ||||     | |  || |     |  ||   |    |  |   |||||| | |      |    | |      
GCCGATATAGGTCTCTCAATGGGCATTTCAGGGACAGAAGTTGCCAAAGAAAGTTCTGACATTATAATCTTGGATGACAACTTCACATCAGTTGTGAAGgtttgtttttccccgaacaaactattctggaatacct--tctaatgaaggataatgtcactaagcaaacaccatggaattcctcataccctcacactaaatt----

upper sequence: GRMZM2G132712_T03 (Zea mays), 5'ss of exon 27
lower sequence: EFJ22392 (Selaginella moellendorffii), 5'ss of exon 22
GCCGATATAGGTCTTTCAATGGGCATTTCCGGGACAGAAGTTGCTAAAGAAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgtttggtagaattatccaagaggacctaactgagttcagcactgattttctttccttgtaaaaaataattccacttgtttggagttcacacattga
|| ||||| |||||||||||||||||    ||||| || || || ||||||||||| |||||||||||  |||||||  ||||  | || |||||||||||  | |    | |  | |    | |   || |        || |  ||  ||||| |                                          
GCTGATATCGGTCTTTCAATGGGCATCCAAGGGACCGAGGTGGCCAAAGAAAGCTCAGACATTATAATTCTGGATGACAACTTTGCATCTGTTGTCAAGgtaagata---acagcttttggtgcgagtctga--------aggatcgaaattcttgcag----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211501925|gb|FL162234.1|FL162234
EST:     AAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAG                         GTTGTTCGTTGGGGACGATCTGTCTACGCTAATATCCAGAAATTCATTCAG
genomic: AAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgtttgg ... tctctttcagGTTGTTCGTTGGGGACGATCTGTCTACGCTAATATCCAGAAATTCATTCAG
EST: gi|5846827|gb|AI999910.1|AI999910
EST:     AAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAG                         GTTGTTCGTTGGGGACGATCTGTCTACGCTAATATCCAGAAATTCATTCAG
genomic: AAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgtttgg ... tctctttcagGTTGTTCGTTGGGGACGATCTGTCTACGCTAATATCCAGAAATTCATTCAG
EST: gi|5325014|gb|AI783205.1|AI783205
EST:     AAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAG                         GTTGTTCGTTGGGGACGATCTGTCTACGCTAATATCCAGAAATTCATTCAG
genomic: AAAGCTCTGACATTATAATCTTGGATGATGACTTCACGTCAGTTGTCAAGgtttgtttgg ... tctctttcagGTTGTTCGTTGGGGACGATCTGTCTACGCTAATATCCAGAAATTCATTCAG