Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAAGCTTTATGGATGCCACTGTTGGCATATTTAATGGGTCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctataaaaaaaaagtttttagcattgttgttaggaatgatgtctgtctagattgaattggcattcttgttgagtttataaaattaagatcaagtt...

Basic information

species Zea mays
transcript GRMZM2G030422_T03
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030422_T03 (Zea mays), 5'ss of exon 26
lower sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 25
ATGCAAGCTTTATGGATGCCACTGTTGGCATATTTAATGGGTCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctataaaaa---aaaagtttttagcattgttgttaggaatgatgtctgtctagattgaattggcattcttgttgagtttataaaattaagatcaagtt
||||||||||| |||||||||||||| ||||||||||||  |||||||||||||| |||||||| ||||||||||| || ||||||||||  |||||||||||||||| |||||   || ||     |  ||     |||   ||  |  ||  || |||| |||||| | ||||| |   | |  |||  |    ||  | |
ATGCAAGCTTTCTGGATGCCACTGTTTGCATATTTAATGCATCGAGTTTGAGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctacaaaaactcaacaggacacaatatatcctttatatattctaacttactggattaaattggtactcttgct---tctgaaaacattttgtcttgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351107|gb|BM895639.1|BM895639
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|22473364|gb|BU037844.1|BU037844
EST:     GACTTCAGATGTCGGATTTTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAA
genomic: GACTTCA-ATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAA
EST: gi|7227452|gb|AW566093.1|AW566093
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTT
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTT
EST: gi|76010934|gb|DT938104.1|DT938104
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA