1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' |
CACACCGCCTCCTAATGGAGCTTCAAGTTCTGACCAACCAGAAAGATGATTAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttcaaagttaatgaaacaaattggaacttctttatttaaattccttggcatgatatgtatagaacatttatttataacgtattgatgcaattta...
species | Zea mays |
transcript | GRMZM2G030422_T01 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ---GG-CTTCAAAGGGTGGTGCGACTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|32908130|gb|CF012943.1|CF012943
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|32865780|gb|CF005462.1|CF005462
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|213187173|gb|FM183060.1|FM183060
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACC---AAG A-AGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|14242945|gb|BG840121.2|BG840121
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ---GG-CTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGGEST: gi|5608394|gb|AI901971.1|AI901971
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGGEST: gi|6056921|gb|AW091326.1|AW091326
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|32866447|gb|CF006129.1|CF006129
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACC---AAG A-AGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|37393773|gb|CF634152.1|CF634152
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ---GG-CTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGGEST: gi|7162284|gb|AW519891.1|AW519891
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTATCCAAGAAG ACAGGGTTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGGEST: gi|32908128|gb|CF012941.1|CF012941
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|32935018|gb|CF039830.1|CF039830
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAG ACAGGGCTTCAAAGGGTGGTGCGCCTAACCTTGGCAGATGGGTTCCAAGGGEST: gi|7304552|gb|AW600491.1|AW600491
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
EST: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCGCGAGTCTAACCAAGAAG ACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
genomic: TAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttca ... tgttctgcagACAGGGCTTCAAAGGGTGGTGCGACTAACCTTGGCAGATAGGTTCCAAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACACCGCCTCCTAATGGAGCTTCAAGTTCTGACCAACCAGAAAGATGATTAAGAAGTTGGAACTGGTAGATTTTTCGTGGCACGAGTCTAACCAAGAAGgtatccttcaaagttaatgaaacaaattggaacttctttatttaaattccttggcatgatatgtatagaacatttatttataacgtattgatgcaattta
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG