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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgtttgataatataacctcagtataaccacggttgttttgacgtcctttatgttttgtaattccaagttccttttcttttcctcag

Basic information

species Zea mays
transcript GRMZM2G025340_T02
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G025340_T02 (Zea mays), 5'ss of exon 26
lower sequence: GLYMA09G36430.1 (Glycine max), 5'ss of exon 27
GGCAGGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgt--ttgataatataacctcagtataaccacggttgttttgacgtccttta--tgttttgtaattccaagttccttttcttttcctcag-------------
     ||||| || ||||| ||||| ||||| ||||||||||| ||||||||||  ||||| || || || |||||||| || || || |||||||  ||||  ||| |   ||||  |    || |  |  |||||   ||| | |||    ||| |||   ||  |||||        | | ||                
-----GATGCAGTAAGCCGAAAAATCAGCTTGGACACCCTAGTTGATTTTGCTGAGGCACATGGATCACAGTGGATATTCATTACTCCGCATGATACTAGgtatttgtttcaataa--tagacatgattattgttgtgaagacattcttgtgttgtcttgggcttgtaagttttaagaactgtactgtactatactaaaata

upper sequence: GRMZM2G025340_T02 (Zea mays), 5'ss of exon 26
lower sequence: Vv16s0013g00490.t01 (Vitis vinifera), 5'ss of exon 27
GGCAGGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgttt-gataatataacctcagtataaccacggttgttttgacgtcctttatgttttgtaattccaagttccttttcttttcctcag----------------
     ||||| || ||||| || || ||||| |||||||| ||  |||||||  | |||||||| ||||||||||| ||||| || ||||||||||||||||   | |  ||| |  | | |       |  ||| | |  | |     || |    |   |      ||  ||| |  |   ||                 
-----GATGCAGTTAGCCGGAAGATCAGCTTGGACACCCTTGTGAATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACTCCTCATGATATCAGgtgaaggtcttatgat-taaatgctttatcacttgctgtc-catttgcaatatggaatttgtttggcatcactttgtactgtgcaatgcagtatgcaagaaa

upper sequence: GRMZM2G025340_T02 (Zea mays), 5'ss of exon 26
lower sequence: Vv16s0013g02080.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGGATGCGGTGAGCCGCAAAATAAGCTTAGACACCCTAGTAGATTTTGCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgtttgataatataacctcagtataaccacggttgttttgacgtcc-tttatgttttgtaattc---caagttccttttcttttcctcag----------------
     ||||| || ||||| || || ||||| |         | ||||||||  | |||||||| ||||||||||| ||||| ||||||||||||||||||  |||   | | |  | | || |  |    ||  || |  |||| ||||   | || ||||         ||  ||| |  |   ||                 
-----GATGCAGTTAGCCGAAAGATCAGCTTTG---------TGGATTTTGCATTGGCACAAGGATCTCAATGGATTTTTATCACCCCTCATGATATCAGg--tgaaggtctta--tgattaaatgctttattactt-gttgtccatttacaatatggaatttgtttggcatcactttgtactgtgcaatgcagtgtgcaagaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211388989|gb|FL456719.1|FL456719
EST:     GCTGTCGCMCAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG                         CATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
genomic: GCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgtttgataat ... ttttcctcagCATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
EST: gi|211018177|gb|FL213622.1|FL213622
EST:     GCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG                         CATGGTGAAGGCTGGGGATAGGATCAAGAAGCAKCAAATGGCTGCTCCTCG
genomic: GCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgtttgataat ... ttttcctcagCATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
EST: gi|113651777|gb|DW810508.1|DW810508
EST:     ATTTATAACCCCTCATGATATCAG                         CATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
genomic: ATTTATAACCCCTCATGATATCAGgtttgataat ... ttttcctcagCATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
EST: gi|37396328|gb|CF635453.1|CF635453
EST:     GCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG                         CATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
genomic: GCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgtttgataat ... ttttcctcagCATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
EST: gi|5608199|gb|AI901866.1|AI901866
EST:     GCTGTCGCCCAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAG                         CATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG
genomic: GCTGTCGCACAAGGGTCTCAATGGATATTTATAACCCCTCATGATATCAGgtttgataat ... ttttcctcagCATGGTGAAGGCTGGGGATAGGATCAAGAAGCAGCAAATGGCTGCTCCTCG