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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatgtttttgtttggccctttacttttttatggcagattttgtttatctgaaatcttgggctattttgacag

Basic information

species Zea mays
transcript GRMZM2G009849_T02
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G009849_T02 (Zea mays), 5'ss of exon 26
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 5'ss of exon 43
GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgac-atgtttttgtttggccctttacttttt-tatggca-gattttgtttatctgaaatcttgggctattttgacag
||||||||||| || ||||||||| ||||||||||||| ||||| |||||||||||||| ||||| || ||||||||||||||    |||  |  |||  || ||| || ||| | |||    || || ||||| |  |  ||     |||||      
GTTCCAAAAACTTTTAATTTTAGCCTATCTGGGGCTTCGTCAAGATCTTGCAAATATGTTTTAAATACTCTCATGCAGgtttgtttgtgtactcttttctccttttgctctttgtttggttcaatgttatttatgtataggctg----tatttcag---

upper sequence: GRMZM2G009849_T02 (Zea mays), 5'ss of exon 26
lower sequence: EFJ11209 (Selaginella moellendorffii), 5'ss of exon 41
----------------------GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatgtttttgtttggccctttacttttttatggcagattttgtttatctgaaatcttgggctattttgacag
                      ||  | |  || |||||  |  |  |   ||| || || ||||||||||||||||| || |||||||| || ||||||||     |||||     |  | |||      | |  |  ||   ||  ||| ||  |                     
TGTGCGAATTTTAACGTTGAAAGTAACTACGACGTTCAACATGGGACTTGGTGGTGCCTCCTCAAGGTCTTGCAAATACGTGTTAAACACGCTAATGCAGgt-----atgttgcacatgcgtcctacgtgctgtactaacattattattttgtcctag--------------------

upper sequence: GRMZM2G009849_T02 (Zea mays), 5'ss of exon 26
lower sequence: EFJ15655 (Selaginella moellendorffii), 5'ss of exon 41
----------------------GTTCCAAAAACCTTCAATTTTAGCTTATCTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatgtttttgtttggccctttacttttttatggcagattttgtttatctgaaatcttgggctattttgacag
                      ||  | |  || |||||  |  |  |   ||| || || ||||||||||||||||| || |||||||| || |||||||| ||       |  ||  |    |      | |  |  ||   ||  ||| ||  |                     
TGTGCGAATTTTAACGTTGAAAGTAACTACGACGTTCAACATGGGACTTGGTGGTGCCTCCTCAAGGTCTTGCAAATACGTGTTAAACACGCTAATGCAGgtatgttgcacatgcgtccgattttacgtgctgtactaacattattattttgtcctag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649605|gb|BM498424.1|BM498424
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACG
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACG
EST: gi|20301651|gb|BQ164594.1|BQ164594
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
EST: gi|61118500|gb|DN559461.1|DN559461
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
EST: gi|18450492|gb|BM428770.1|BM428770
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACGTCTTGCTCATGCTGCGAAGGAGGGTACCCTTGAC
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
EST: gi|19822548|gb|BQ048572.1|BQ048572
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACG
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACG
EST: gi|67035401|gb|CO463934.1|CO463934
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
EST: gi|18450764|gb|BM429042.1|BM429042
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
EST: gi|18648832|gb|BM497651.1|BM497651
EST:     CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACGTCTTGCTCATGCTGTGAAGGAGGGTACCCTTGAC
EST: gi|18648721|gb|BM497540.1|BM497540
EST:     CTGGGGCTTCTTCAAGGNCTTGCAAATATGNCTTAAACACACTCATGCAG                         ACATTTCAGATCAAACG
genomic: CTGGGGCTTCTTCAAGGTCTTGCAAATATGTCTTAAACACACTCATGCAGgtttgacatg ... attttgacagACATTTCAGATCAAACG