Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAACGAGAAATCGGATGTGTACAGCTACGGCATTGTCTTGCTGGAGCTGCTTACCGGCAAAAAGCCTGTCGACGACGAGTGCAACCTTCACCACTTGgtaactattccatctatctttttacttgctcgcaatagttttccttgatttttctttccctagtcccacttcacatatacgacctttagattttacgcct...

Basic information

species Zea mays
transcript GRMZM2G463904_T01
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G463904_T03 (Zea mays), 5'ss of exon 26
lower sequence: LOC_Os02g53720.1 (Oryza sativa), 5'ss of exon 5
GATCAACGAGAAATCGGATGTGTACAGCTACGGCATTGTCTTGCTGGAGCTGCTTACCGGCAAAAAGCCTGTCGACGACGAGTGCAACCTTCACCACTTGgtaactattccatctatctttttacttgctcgcaatagttttccttgatttttctttccctagtcccacttcacatatacgacctttagattttacgcct--
  ||||||||||||||||||| |||||||| ||||||||| | |||||||| ||||| ||||||||||| |||||  | |||||||| || || |||||||||||||||   || ||    || ||       | | |    | |     |||| ||| | |    | |||  ||| |  |        | |  ||      
CCTCAACGAGAAATCGGATGTCTACAGCTATGGCATTGTCCTCCTGGAGCTACTTACAGGCAAAAAGCCAGTCGATAATGAGTGCAATCTCCATCACTTGgtaactatttt-tccattcgcttgctactgtttatttgaaaacttgttcctttccttcaccatatactctt-gcatttgaggttcaataagtgcacaatcat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|166416593|gb|EG304671.1|EG304671
EST:     TCGACGACGAGTGCAACCTTCACCACTTG                         ATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTCGACCAGGAC
genomic: TCGACGACGAGTGCAACCTTCACCACTTGgtaactattc ... ctacctccagATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGAC
EST: gi|71758846|gb|DR956783.1|DR956783
EST:     TGCTTACCGGCAAAAAGCCTGTCGACGACGAGTGCAACCTTCACCACTTG                         ATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGAC
genomic: TGCTTACCGGCAAAAAGCCTGTCGACGACGAGTGCAACCTTCACCACTTGgtaactattc ... ctacctccagATCCTATCCAAAGCCGCAGAGAACACGGTCATGGAGACGGTAGACCAGGAC