Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattttttgttctatattaaacgctacttcaatattttcatgcaccctatacccatcgagttagcccttaaatttttttaaaatgaatgaggatg...

Basic information

species Zea mays
transcript GRMZM2G388892_T02
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
lower sequence: LOC_Os10g35290.1 (Oryza sativa), 5'ss of exon 24
CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattttttgttctatattaaacgctacttcaatattttcatgcaccctatacccatcgagttagcccttaaatttttttaaaat--gaatgaggatg-
 || ||||||||||||||||||||||||||| | |||||||||||| | |||||||| || || ||||| |||||||||||||||||||||||||| ||||||   | |  || || | | |   |   || |    |||  | |    |  ||| |      | ||  ||      | | ||  | ||  || ||| |||  
TCTATATAGTGGAGTTTTTGGCACTGAGATGAAATGTGAGATTTTCCTTGGACCTGTATACTATCAACGCCTTCGTCATATGGTCTCAGACAAATTTCAGgtgggcaatcattatt-tgtgtaccatcttattatg-tatagttaaagtcgttat-ctggcttatttttcctccttttctattcgatatcggattgaagatct

upper sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
lower sequence: GLYMA13G26190.1 (Glycine max), 5'ss of exon 29
CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgatta--ttttttgttctatattaaacgctacttcaatattttca-tgcaccctatacccatcgagttagccct-taaatttttttaaaatgaatgaggatg--
 || || ||||| |||| ||| || ||  |    |||||||| || || |||||||||||||| || || || ||||| ||||| ||||||||||| |||||||  |  ||   |||| | || |      | ||  || |   |||  | |    ||||    |   ||  |  | |  |    || ||||||  ||   ||   
TCTATACAGTGGTGTTTATGGAACAGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAGCGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaacaaattcactgttttttact------tcctataaaaccatcagcgaaaatgatactttccttattttctgtgttgacacattaaaaatgtttggctatcta

upper sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
lower sequence: GLYMA17G23500.2 (Glycine max), 5'ss of exon 3
CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtga--ttattttttgttct-atattaaacgctact-tcaatattttcatgcacc-ctatacccatcgagttagcccttaaatttttttaaaatgaatgaggatg
 || |||||||| |||| ||| || ||  |    |||||||| || || |||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||||  | |||   |||| | |  |   |    ||   ||  |   | || |  | | ||       ||   |    |    ||| |  | | ||  || |    
TCTATATAGTGGTGTTTATGGAACGGAACTAACATGTGAGATATTTATTGGACCTGTTTATTATCAACGGCTGCGTCACATGGTTTCAGACAAATTTCAGgtgaactaattcactgttttgacttcctatataaccaccagcaaaatgatacttctccatgttttctgaa--aatgttaggctttctagatagtggttgtga---

upper sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
lower sequence: AT1G29940.1 (Arabidopsis thaliana), 5'ss of exon 26
CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattttttgttctatattaaacgctacttcaatattttcatgcaccctatacccatcgagttagcccttaaatttttttaaaatgaatgaggatg-------------
  | ||||||||   ||| ||    ||  || | |||||||| || || || |||||||| |||||  | || ||||| |||||||||||||||||||||||  || |      ||||   || |   ||  |   ||  |  |||  |  ||  | |   | | ||  | | |     |  |  |  ||||| |  ||              
ATTGTATAGTGGGTATTTAGGAGTAGAACTGAAGTGTGAGATATTTATGGGGCCTGTTTACTACCAGAGACTGCGTCACATGGTCTCAGACAAATTCCAGgt--ttttcgacccttctggcttcatttcttttatcatcctgacatatagtctccaactggc-acttgtctcatcttcgtgctatatctgaatcataatactctggcttacag

upper sequence: GRMZM2G388892_T01 (Zea mays), 5'ss of exon 26
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 5'ss of exon 25
CCTTTATAGTGGAGTTTTTGGCACTGAGATGGACTGTGAGATTTTCATCGGACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattttttgttctatattaaacgc-tacttcaatattttcatgcaccctatacccatcgagttagcccttaaatttttttaaaatgaatgaggatg----
  | || |||||| ||| ||| || ||  |    ||||||||||| || |||||||||||||| || || || || || ||||||||||||||||| ||||||| | |||  | ||    ||||      ||   | |    ||  | || | | ||    | |  | ||   | |  | | |   || | || |   |||    
ATTGTACAGTGGATTTTATGGTACAGAACTCACATGTGAGATTTTTATTGGACCTGTTTATTATCAGCGACTGCGGCACATGGTCTCAGACAAATTTCAGgtgact-tttcgtatttacaattatgtaaatagagctagggcttacttcatctt-tatattttgcttaagatataaggtgtgt---aattcaaggcatatgttct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18661453|gb|BM501405.1|BM501405
EST:     GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG                         GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: gi|211454577|gb|FL410335.1|FL410335
EST:     GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG                         GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: gi|211368775|gb|FL398828.1|FL398828
EST:     GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG                         GTCCGCACTACCGGTCGTATAGACMAGATAACAAGACAACCCATAGGAGGA
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: gi|60672564|gb|DN475267.1|DN475267
EST:     GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG                         GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: gi|60359336|gb|DN226309.1|DN226309
EST:     GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG                         GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
EST: gi|60394928|gb|DN227797.1|DN227797
EST:     GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAG                         GTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA
genomic: GACCTGTTTATTACCAACGTCTTCGTCATATGGTCTCAGACAAATTCCAGgtgattattt ... atgtactcagGTCCGCACTACCGGTCGTATAGACCAGATAACAAGACAACCCATAGGAGGA