1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
ATAGTGCGATCACTCTTGGGAGGCTTAGCTGGGTCTGTCCAGACATCGTGGCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAGTGCCTTGTGCACgtaagtgccccctctttttttccctggacccgaagggttagagaaggaaggatgggtttcaggtgttttatctatggtttgttgcatgacgaatggaacttgtttctttggtgtgaaccag
species | Zea mays |
transcript | GRMZM2G376731_T01 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
EST: GCCCCTCATATGGAGCATTTCATGCTATTATGGTGCAGTGCCTTGTGCAC GATCAGAGATGATTTTGAGAAAGAGGACGCGTTTCATGGACTGTGTGCAATEST: gi|32856540|gb|CD996221.1|CD996221
genomic: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAGTGCCTTGTGCACgtaagtgccc ... tgtgaaccagGATCAGAGATGATTTTGAGAAAGAGGACGCGTTTCATGGACTGTGTGCAAT
EST: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAATGCCTTGTGCAC GATCAGAGATGATTTTGAGACAGAGGACGCGTTTCATGGACTGTGTGCAATEST: gi|94474879|gb|EB703837.1|EB703837
genomic: GCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAGTGCCTTGTGCACgtaagtgccc ... tgtgaaccagGATCAGAGATGATTTTGAGAAAGAGGACGCGTTTCATGGACTGTGTGCAAT
EST: CAAGCATGGTGCAGTGCCTTGTGCAC GATCAGAGATGATTTTGAGAAAGAGGACGCGTTTCATGGACTGTGTGCAATEST: gi|76020992|gb|DT948162.1|DT948162
genomic: CAAGCATGGTGCAGTGCCTTGTGCACgtaagtgccc ... tgtgaaccagGATCAGAGATGATTTTGAGAAAGAGGACGCGTTTCATGGACTGTGTGCAAT
EST: GCAAGCATGGTGCAGTGCCTTGTGCAC GATCAGAGATGATTTTGAGAAAGAGGACGCGTTTCATGGACTGTGTGCAAT
genomic: GCAAGCATGGTGCAGTGCCTTGTGCACgtaagtgccc ... tgtgaaccagGATCAGAGATGATTTTGAGAAAGAGGACGCGTTTCATGGACTGTGTGCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGTGCGATCACTCTTGGGAGGCTTAGCTGGGTCTGTCCAGACATCGTGGCCCCTCATATGGAGCATTTCATGCAAGCATGGTGCAGTGCCTTGTGCACgtaagtgccccctctttttttccctggacccgaagggttagagaaggaaggatgggtttcaggtgttttatctatggtttgttgcatgacgaatggaacttgtttctttggtgtgaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA