Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCAGAGCTCACCAAAATAGTTACAGATAATATACAGTATGCCAAAGTTGTGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgatttttgacatctaaatatgatatacaattcatataaaagacattgtttagtaaggtccgttgttttcag

Basic information

species Zea mays
transcript GRMZM2G162531_T02
intron # 25
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19057783|gb|BM736450.1|BM736450
EST:     TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAG                         ATATTGTCAGATGAAGAGCTAGAAAC-CAGCTAAAGGAGGCAGCAG
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgatttttg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAG
EST: gi|32932342|gb|CF037154.1|CF037154
EST:     TGAAGATGATGGGCAACAGAGTTAGTGCAGTCAACCTTGACTTCTCTGAG                         ATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAACA
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgatttttg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
EST: gi|89760346|gb|DY688794.1|DY688794
EST:     TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAG                         ATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgatttttg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA
EST: gi|32945554|gb|CF050373.1|CF050373
EST:     TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAG                         ATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAACAATAATA
genomic: TGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgatttttg ... ttgttttcagATATTGTCAGATGAAGAGCTAGAAACACAGCTAAAGGAGGCAGCAGTAATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCAGAGCTCACCAAAATAGTTACAGATAATATACAGTATGCCAAAGTTGTGAAGATGATGGGCAACAGAGTTAATGCAGTCAACCTTGACTTCTCTGAGgtgatttttgacatctaaatatgatatacaattcatataaaagacattgtttagtaaggtccgttgttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG