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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAAGCTTTATGGATGCCACTGTTGGCATATTTAATGGGTCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctataaaaaaaaagtttttagcattgttgttaggaatgatgtctgtctagattgaattggcattcttgttgagtttataaaattaagatcaagtt...

Basic information

species Zea mays
transcript GRMZM2G030422_T01
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030422_T03 (Zea mays), 5'ss of exon 26
lower sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 25
ATGCAAGCTTTATGGATGCCACTGTTGGCATATTTAATGGGTCGAGTTTGAGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctataaaaa---aaaagtttttagcattgttgttaggaatgatgtctgtctagattgaattggcattcttgttgagtttataaaattaagatcaagtt
||||||||||| |||||||||||||| ||||||||||||  |||||||||||||| |||||||| ||||||||||| || ||||||||||  |||||||||||||||| |||||   || ||     |  ||     |||   ||  |  ||  || |||| |||||| | ||||| |   | |  |||  |    ||  | |
ATGCAAGCTTTCTGGATGCCACTGTTTGCATATTTAATGCATCGAGTTTGAGACTCCAATGTCGAATTCTTCCAGCATCCTATCTTCCTCAGAATATCAGgtattctacaaaaactcaacaggacacaatatatcctttatatattctaacttactggattaaattggtactcttgct---tctgaaaacattttgtcttgct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351107|gb|BM895639.1|BM895639
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|83278414|gb|DV942422.1|DV942422
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCTGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|32908130|gb|CF012943.1|CF012943
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|32865780|gb|CF005462.1|CF005462
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|22473364|gb|BU037844.1|BU037844
EST:     GACTTCAGATGTCGGATTTTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAA
genomic: GACTTCA-ATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAA
EST: gi|7227452|gb|AW566093.1|AW566093
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTT
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTT
EST: gi|5608394|gb|AI901971.1|AI901971
EST:     TTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: TTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|6056921|gb|AW091326.1|AW091326
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGAATCTTCCTCCAAATATCAG                         TCTGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|37393773|gb|CF634152.1|CF634152
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|7162284|gb|AW519891.1|AW519891
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|76010934|gb|DT938104.1|DT938104
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|32908128|gb|CF012941.1|CF012941
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
EST: gi|32935018|gb|CF039830.1|CF039830
EST:     AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAG                         TCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA
genomic: AGACTTCAATGTCGGATTCTTCCAGCTTCGTATCTTCCTCCAAATATCAGgtattctata ... tcttttgtagTCCGAGCGTTCATCCTGTTGTGGTTGCGGCACACCCTTCGGAAGCAAGCCA