Sequence
atgc intronic sequence ATGC exonic sequenceTCAAGTGATGGTGCTGTCCTTGTGAATGGAAACAGTAGCGAGGAACAGTGGGGTACGAAAAATGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAAGTgtacagtcctaaataccttattttcctggtcttacctccaagtacacgatattaggaaactcctgctgggtgatctattctggatatatccttaagttgc...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G141587_T03 (Zea mays), 5'ss of exon 24
lower sequence: LOC_Os02g11840.2 (Oryza sativa), 5'ss of exon 15
TCAAGTGATGGTGCTGTCCTTGTGAATGGAAACAGTAGCGAGGAACAGTGGGGTACGAAAAATGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAAGTgtacagtcctaaataccttatttt---cctggtcttacctccaagtacacgatattaggaaactcctgctgggtgatc-tattctggatatatccttaagttgc
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TCGACTGATGGTGCTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGGTACGAACAACGAAGAATCATCAGCATAAAAGCTGTAGTTGAGCAAGTgtacagtcctaaaaccctttttttggtcctcgtttatcctcccagtgcaccaatgatcacaatgaaaacttgatgctggtgtcctcaaaaagaaagaaag----
upper sequence: GRMZM2G141587_T03 (Zea mays), 5'ss of exon 24
lower sequence: LOC_Os02g11840.1 (Oryza sativa), 5'ss of exon 15
--TCAAGTGATGGTGCTGTCCTTGTGAATGGAAACAGTAGCGAGGAACAGTGGGGTACGAAAAATGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAAGTgtacagtcctaaataccttattt---tcctggtcttacctccaagtacacgatattaggaaactcctgctgggtgatctattctggatatatccttaagttgc-----
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GTTCGACTGATGGTGCTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGGTACGAACAACGAAGAATCATCAGCATAAAAGCTGTAGTTGAGCAAgtgtacagtcctaaaaccctttttttggtcctcgtttatcctcccagtgcacca-------atgatcacaatgaaaacttgatgctgg---tgtcctcaaaaagaaagaa
upper sequence: GRMZM2G141587_T03 (Zea mays), 5'ss of exon 24
lower sequence: LOC_Os02g11830.2 (Oryza sativa), 5'ss of exon 24
------------------------------------------------TCAAGTGATGGTGCTGTCCTTGTGAATGGAAACAGTAGCGAGGAACAGTGGGGTACGAAAAATGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAAGTgtacagtcctaaataccttattt--tcctggtcttacctccaagtacacgatattaggaaactcctgctgggtgatctattctggatatatccttaagttgc
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GAAGAGAGCCAAGAAGATGCTGTTGAGGTTGATGTTGAAGCTGATGGTTCGACTGACGGTACTGTCCTTGTGAACGGAAATGATACCGAGGAACAGTGGGgtacgaacaatgaagaatcattagcataaaagctgtagttgagcaagtgtacagtcctaaaacctttttttcgtcctagtttctcctcccagggcaccaa--------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7227807|gb|AW566448.1|AW566448EST: GGGTACGAAAAATGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAAGT TGCTGACTGAGCAATAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGT
genomic: GGGTACGAAAAATGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAAGTgtacagtcct ... ttctttgcagTGCTGACTGAGCAATAGTGGATTAACGGATCAGCAACTTCGCTTCAGCGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAAGTGATGGTGCTGTCCTTGTGAATGGAAACAGTAGCGAGGAACAGTGGGGTACGAAAAATGAAGAACCATCAGCATAAAAGCTGTAGTTGAGCAAGTgtacagtcctaaataccttattttcctggtcttacctccaagtacacgatattaggaaactcctgctgggtgatctattctggatatatccttaagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG