Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAACGAGCACCTGGGAAAGAAAGGTATCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttactttcacaggatttcattttcttgatgtttgcatacatatctgctttgagccagtctgagtaaaatgtttatggtgttcactgtag

Basic information

species Zea mays
transcript GRMZM2G025340_T01
intron # 24
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211018176|gb|FL213621.1|FL213621
EST:     TCAGTGGGCACATCAATGTAGA-T-TAAGAATGAAGTTCTGTCTGTTGAG                         CTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
genomic: TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttact ... ttcactgtagCTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
EST: gi|32932707|gb|CF037519.1|CF037519
EST:     TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAG                         CTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
genomic: TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttact ... ttcactgtagCTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
EST: gi|211018178|gb|FL213623.1|FL213623
EST:     TCTGTGGGCACATCAATGTAGA-T-TAAGAATGAAGTTCTGTCTGTTGAG                         CTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
genomic: TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttact ... ttcactgtagCTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
EST: gi|32931357|gb|CF036169.1|CF036169
EST:     TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAG                         CTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
genomic: TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttact ... ttcactgtagCTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
EST: gi|32930376|gb|CF035188.1|CF035188
EST:     TCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAG                         CTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
genomic: TCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttact ... ttcactgtagCTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
EST: gi|32931744|gb|CF036556.1|CF036556
EST:     TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAG                         CTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
genomic: TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttact ... ttcactgtagCTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
EST: gi|211018179|gb|FL213624.1|FL213624
EST:     TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAG                         CTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA
genomic: TCAGTGGGCACATCAATGTAGATTATAAGAATGAAGTTCTGTCTGTTGAGgtgagttact ... ttcactgtagCTGACAATGCCTCAAGATGCGTCTCGTGATACCATTAGAGACACTAGAGGA