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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGGAGCTTTTGAAGGACATGAAGAGTTGTCACCTCTTGGGTATCATCTGGCGAAACTGCCTGTTGATGTTTTGATTGGAAAGgtgtggctaaaatatagttcactcacccttttatttcttgaatacacatgagagctgcaattacagcataaccaaaaacacatggcacacctcacacaca...

Basic information

species Zea mays
transcript GRMZM2G013283_T02
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G013283_T01 (Zea mays), 5'ss of exon 24
lower sequence: LOC_Os04g35260.1 (Oryza sativa), 5'ss of exon 24
GTTGGAGCTTTTGAAGGACATGAAGAGTTGTCACCTCTTGGGTATCATCTGGCGAAACTGCCTGTTGATGTTTTGATTGGAAAGgtgtggctaaaatatagttcactcacccttttatttcttg-aatacacatgagagctgca---attacagcataaccaaaaac-acatggcacacctcacacaca
|||||||| |||||||||||||| || || ||||||||||| |||||| |||| ||| |||| |||||||||||||||||||||||| |||||||||||| ||  ||  | | || ||     |  | | | ||      ||||   ||| |||||||   |  | | |||||       |  |     
GTTGGAGCATTTGAAGGACATGAGGAATTATCACCTCTTGGCTATCATTTGGCCAAATTGCCAGTTGATGTTTTGATTGGAAAGgtgcggctaaaatataattttctggctcattcatcaaaagtgacatagatatttaatgcatacatttcagcatagtaactagctacatgttgttgtttgc-----

upper sequence: GRMZM2G013283_T01 (Zea mays), 5'ss of exon 24
lower sequence: AT1G58060.1 (Arabidopsis thaliana), 5'ss of exon 25
GTTGGAGCTTTTGAAGGACATGAAGAGTTGTCACCTCTTGGGTATCATCTGGCGAAACTGCCTGTTGATGTTTTGATTGGAAAGgtgtggctaaaatatagttcactcacccttttatttcttgaatacacatgagagctgcaattacagcataaccaaaaacacatggcacacctcaca-caca------
||||| ||| |||||||  ||||||||||| |||| |||||| ||||| | || ||||| ||||||||||| || ||||||||||| ||  | |   | | | |  |  | ||   |||||  || |     ||   ||     | || | |    || | | |  |   |  |||| |  ||||      
GTTGGTGCTGTTGAAGGGGATGAAGAGTTGACACCACTTGGGCATCATTTAGCCAAACTTCCTGTTGATGTGTTAATTGGAAAGgtttgcgtcagtaacattactgttgcactaaaatttcc-gagt-----tggaggccttggtcactg-actctcatatatatgttttattcctctcctcacaacatct

upper sequence: GRMZM2G013283_T01 (Zea mays), 5'ss of exon 24
lower sequence: Vv12s0035g00800.t01 (Vitis vinifera), 5'ss of exon 23
GTTGGAGCTTTTGAAGGACATGAAGAGTTGTCACCTCTTGGGTATCATCTGGCGAAACTGCCTGTTGATGTTTTGATTGGAAAGgtgtggctaaaatatagttcactcacccttttatttcttgaatacacatgagagctgcaattacagcataaccaaaaacacatggcacacctcacacaca--
||||| ||| |||||||  ||||||||||| | ||||||||| ||||| |||| ||||| ||||||||||| || ||||||||||||||  | |  ||    |  |   |  ||| |    || ||||    | ||  |||  |   ||     |  |  |     | | | | || |        
GTTGGTGCTATTGAAGGGGATGAAGAGTTGACGCCTCTTGGGCATCATTTGGCTAAACTTCCTGTTGATGTGTTAATTGGAAAGgtgtgcatcatttacttctgtccttctatttcaaaggttaaataattgt-agtactgggaactcattgctaatattattgatttgga-atctaatgtctggg