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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGCTATAAGAGAGGCCTATCCAGACATTCAGATGATTTCAAACTGTGATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtccttactgccaagtctgtttgtttcatttttttctctgccttgattctgtggttctgtctaattattcgatgtcaaggtcagcttgccttctcttaaatttaaccagtgcttctttctcttag

Basic information

species Zea mays
transcript GRMZM2G006130_T05
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os11g03730.3 (Oryza sativa), 5'ss of exon 12
CAATGCTATAAGAGAGGCCTATCCAGACATTCAGATGATTTCAAACTGTGATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtccttactgccaagtctgtttgtttcatttttttctctgccttgattctgtggttctgtctaattattcgatgtcaaggtcagcttgccttctcttaaatttaaccagtgcttctttctcttag
 ||||||||||| |||||||||||||||||||| ||||||||||| ||||||| |||||| || ||||||||||||||||| ||||| ||||||||||||||||| | || |        ||   |||  |  | || | |    | |        |  |||| | | |  |    |||||||||     || || | | ||||||| || || |  | |||| |  |||
TAATGCTATAAGGGAGGCCTATCCAGACATTCAAATGATTTCAAATTGTGATGCTTCATCAAGTCCACTTGACCATCCTGCTGATTTATATGATTTCCATgtaaactactca--------tcctcttgagttgtgttctccagcacttc-------tcattctttgtcacaa----atgtcaaggct--tttcccatttattaaattgaaacaat--tccttttttctag

upper sequence: GRMZM2G006130_T01 (Zea mays), 5'ss of exon 12
lower sequence: LOC_Os12g03470.5 (Oryza sativa), 5'ss of exon 12
CAATGCTATAAGAGAGGCCTATCCAGACATTCAGATGATTTCAAACTGTGATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtccttactgccaagtctgtttgtttcatttttttctctgccttgattctgtggttctgtctaattattcgatgtcaaggtcagcttgccttctcttaaatttaaccagtgcttctttctcttag
 ||||||||||| ||||||||||| |||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||| ||||| ||||| ||||||||||| | || |             |  | |    || |  | |||  |  ||||    |||||||        | ||||||||||    || || | | |||||||  |  | | | | |||||||   
TAATGCTATAAGGGAGGCCTATCCGGACATTCAAATGATTTCAAATTGTGATGCTTCATCAAGACCACTTGACCATCCTGCTGATTTATATGACTTCCATgtaaactactca-------------tcctctggagttctgttatgcagtacttctc--attctgtca------ccaatgtcaaggtt--tttcccatttattaaattctaataattcctttttctctag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87151803|gb|DY396592.1|DY396592
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|211378660|gb|FL357038.1|FL357038
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|211495379|gb|FL350690.1|FL350690
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32923966|gb|CF028778.1|CF028778
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|211474807|gb|FL320108.1|FL320108
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATNTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32924623|gb|CF029435.1|CF029435
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|20300152|gb|BQ163095.1|BQ163095
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32929966|gb|CF034778.1|CF034778
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32929408|gb|CF034220.1|CF034220
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|18654846|gb|BM499651.1|BM499651
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32923839|gb|CF028651.1|CF028651
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTGTGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|211258110|gb|FL346334.1|FL346334
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|21331549|gb|BQ486930.1|BQ486930
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32924017|gb|CF028829.1|CF028829
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32924183|gb|CF028995.1|CF028995
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|211336372|gb|FL380531.1|FL380531
EST:     TTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: TTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32928349|gb|CF033161.1|CF033161
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32924613|gb|CF029425.1|CF029425
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|32924051|gb|CF028863.1|CF028863
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA
EST: gi|18661865|gb|BM501621.1|BM501621
EST:     ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCAT                         GTCTATACTGATTCTAAGACTTTGNTTAACATGAGGAGCACATTTGACAGA
genomic: ATGGTTCATCTAGACCACTTGACCATCCTGCGGATTTGTATGATTTCCATgtaaagtcct ... tttctcttagGTCTATACTGATTCTAAGACTTTGTTTAACATGAGGAGCACATTTGACAGA