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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGGAACAAGGGTGAGGAACATCAGGGTACGGACAATGAAGGAGCTTTATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACGgtgattcactgtctttgaatttttgagttttagtacacttgaatccatagctgtcctcaaagtttgggtagccattccaatctatctcaatacacaatat...

Basic information

species Zea mays
transcript GRMZM2G000645_T01
intron # 24
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349772|gb|DN216745.1|DN216745
EST:     TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACG                         TGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
genomic: TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACGgtgattcact ... ctcctcgcagTGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
EST: gi|9730934|gb|BE509686.1|BE509686
EST:     TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACG                         TGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
genomic: TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACGgtgattcact ... ctcctcgcagTGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
EST: gi|60346615|gb|DN213588.1|DN213588
EST:     TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACG                         TGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
genomic: TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACGgtgattcact ... ctcctcgcagTGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
EST: gi|8665311|gb|BE186127.1|BE186127
EST:     TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACG                         TGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
genomic: TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACGgtgattcact ... ctcctcgcagTGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
EST: gi|8665607|gb|BE186423.1|BE186423
EST:     TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACG                         TGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
genomic: TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACGgtgattcact ... ctcctcgcagTGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
EST: gi|60359372|gb|DN226345.1|DN226345
EST:     TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACG                         TGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA
genomic: TATCTGCCTAGAATTCTTGGCAAATATGGGAACCCCAAGTTTTGCCTACGgtgattcact ... ctcctcgcagTGCTAACTCAACATGAATAGGGGCTGAAAGAAGCACAGCTCATTGGCTGCA