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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTTAGGTAATCCTGGACTCTGTGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagagtgttgcattcatcaatttatttgacctgttttttttttgtcaatacattataaaccaagatcttttcttctggattttctatcag

Basic information

species Zea mays
transcript GRMZM5G809695_T01
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G809695_T03 (Zea mays), 5'ss of exon 22
lower sequence: LOC_Os06g10230.1 (Oryza sativa), 5'ss of exon 23
CTTTTTAGGTAATCCTGGACTCTGTGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagagtgttgcattcatcaatttatttgacctgttttttttttgtcaatacattataaaccaagatcttttcttctggattttctat-cag
|||||| |||||||| ||||| ||||||||||||||||||||||| || |||||  ||||||| | | | |||||||| ||   | || |||||||      || | || |  ||||||  |  | | | |    ||  |||  | |  |   ||  ||||| | | |||
CTTTTTGGGTAATCCAGGACTTTGTGGATATTGGCTTGGTTCTTCGTGCCGTTCATCTGGCCATCAACAGAAACgtaacaaa--tattccattcat------atcttacataattttttcataccta-atagacaaagtcaacttttcgttacctacattttatttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71769229|gb|DR967166.1|DR967166
EST:     TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAAC                         CGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
genomic: TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagag ... tttctatcagCGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
EST: gi|211021287|gb|FL334113.1|FL334113
EST:     TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAAC                         CGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
genomic: TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagag ... tttctatcagCGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
EST: gi|211538240|gb|FL353975.1|FL353975
EST:     TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAAC                         CGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCYGTGGGTGGACTTGTTA
genomic: TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagag ... tttctatcagCGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
EST: gi|28873715|gb|CB329664.1|CB329664
EST:     TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAAC                         CGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
genomic: TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagag ... tttctatcagCGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
EST: gi|211403947|gb|FL320399.1|FL320399
EST:     TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAAC                         CGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
genomic: TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagag ... tttctatcagCGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA
EST: gi|32164946|gb|CD670264.1|CD670264
EST:     TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAAC                         CGCCAATCTCAAAGGCTGCCATAATTGGCGTTGCTGTGGGTGGACTTGTTA
genomic: TGGATATTGGCTTGGTTCTTCATGTCGTTCCACTGGCCACCGAGACAAACgtaagaagag ... tttctatcagCGCCAATCTCAAAGGCTGCCATAATTGGTGTTGCTGTGGGTGGACTTGTTA