Sequence
atgc intronic sequence ATGC exonic sequenceCTCCACCACAACTTGAATTTATGTTGAATAAATATCCCAATCTTCGGACACCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttacaatatttattttagtgttacaagcttactcaattttcatacatccttttgatggattgagatattccagcctctagttaaggtgctataa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G466139_T01 (Zea mays), 5'ss of exon 23
lower sequence: LOC_Os01g49940.1 (Oryza sativa), 5'ss of exon 26
CTCCACCACAACTTGAATTTATGTTGAATAAATATCCCAATCTTCGGACACCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttacaatatttattttagtgttacaagcttactcaattttcat---acatcctt---ttgatggattg-agatattccagcctctagttaaggtgctataa
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CTCCACCCCAGCTTGAAATAGCTTTGAATAAGTACCCCAATCTACGAACTCCTCTTTGTTCCTTTGTTAATCAGCGGAACATGCACAGCATCTTGCCCAGgtactttcccaatattattattagtcttgacagcttgctcctttttcgttttacatttttgattttatgggcagtaaatacttaagcatatagttaccac-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31362190|gb|CD446547.1|CD446547EST: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAG ACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
genomic: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
EST:
gi|67029877|gb|CO458626.1|CO458626EST: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAG ACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
genomic: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
EST:
gi|60395389|gb|DN228258.1|DN228258EST: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAG ACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
genomic: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
EST:
gi|6095471|gb|AW120138.1|AW120138EST: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAG ACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
genomic: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
EST:
gi|67026985|gb|CO455734.1|CO455734EST: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAG ACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
genomic: CCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
EST:
gi|61118779|gb|DN559740.1|DN559740EST: TTAATCAGCGGAATATGCATAACACCTTGCCCAG ACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
genomic: TTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGAT
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
118CTCCACCACAACTTGAATTTATGTTGAATAAATATCCCAATCTTCGGACACCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGATGGCATTTGTGACAGCTACATTACAAACAGCGGATGCAACCACCTCTCTT
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
60CTCCACCACAACTTGAATTTATGTTGAATAAATATCCCAATCTTCGGACACCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGATGGCATTTGTGACAGCTACATTACAAACAGCGGATGCAACCACCTCTCTT
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
72CTCCACCACAACTTGAATTTATGTTGAATAAATATCCCAATCTTCGGACACCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGATGGCATTTGTGACAGCTACATTACAAACAGCGGATGCAACCACCTCTCTT
Block sizes:
49 (upstream exon),
46 (downstream exon)
Score:
71CTCCACCACAACTTGAATTTATGTTGAATAAATATCCCAATCTTCGGACACCTCTTTCTTCCTTTGTTAATCAGCGGAATATGCATAACACCTTGCCCAGgtacctttac ... ataattgcagACAGATTTTGAACATTCTGGGTATTTTTAGTGAAACACAGCAGGCACCGATGGCATTTGTGACAGCTACATTACAAACAGCGGATGCAACCACCTCTCTT