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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttcttatgcacgagcaataactgcatgattttttttccacacggtagatagttgcttccatttgtgtctcccggtattcttgatttacatatcgatatcaatgttattaattctgctttgtgtatcatttgagatgtgcaagatattgtag

Basic information

species Zea mays
transcript GRMZM2G346168_T02
intron # 23
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33103043|gb|CF063003.1|CF063003
EST:     GGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGGTAGCCCTGCAGTT
genomic: GGTACCGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|113676171|gb|DW831928.1|DW831928
EST:     GTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: GTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|166609607|gb|EG266550.1|EG266550
EST:     CTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: CTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
EST: gi|161591870|gb|EY960905.1|EY960905
EST:     CGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG                         GTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT
genomic: CGGCAAGGTTGCAACTCCTGCTCAGGCTCAGGAGgtatagcttc ... gatattgtagGTTCATGATGGTCTGAGAAAGTGGCTCCACTCCAATGTTAGCCCTGCAGTT