Sequence
atgc intronic sequence ATGC exonic sequenceATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcactccgtatttatgctacttttcttccaactgtgacatggttataaataacccggccacaacttctcttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: LOC_Os07g47530.1 (Oryza sativa), 5'ss of exon 24
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcactccgtatttatgcta---cttttcttccaactgtgacatggttataaata---acccggccacaacttctcttcag
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ATGGTCTGAGAACAAAAGATAAAGAACGCGTATTAGTACTTGCTGCCACCAATAGACCATTTGATCTTGATGAAGCTGTTGTTAGGAGGCTCCCCAGGAGgtaactttttttacatcgctgtggtattccttttatttttacaatgaaatgctaatggttgcttgcctgatcaca-tatcaatttag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 23
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaa----ttgcactccgtatttatgctacttttc---ttccaactgtgacatg-gttataa---ataacccggccacaacttctcttcag--
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ATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgttatgtttaatgttaacttgtattttcatgttttacagatgacatctattctaatgcatggtctgacttcattttttttttgtag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: GLYMA02G17400.1 (Glycine max), 5'ss of exon 20
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcactccgtatttatgctacttttcttccaactgtgacatggttataaataacccggccacaacttctcttcag----------------
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ATGGTTTGAGAACAAAAGATAAAGAGCGTATACTTGTTCTTGCTGCTACAAATAGACCTTTTGATCTTGATGAGGCTGTTATTAGGAGACTTCCACGAAGgtaaact-cgttatgt-ttgatgttaacttcttttatttcgtgttttacaaatgag-atctatgctaattcgtgttctttgttgaaaaatattgtag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 19
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaa----ttgcactccgtatttatgctacttttc---ttccaactgtgacatg-gttataa---ataacccggccacaacttctcttcag--
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ATGGTCTGCGTACAAAAGATAAAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGATGAGGCTGTTATTAGGAGGCTTCCTCGACGgtgagcatgttatgtttaatgttaacttgtattttcatgttttacagatgacatctattctaatgcatggtctgtcttcaatttttttttgtag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: GLYMA17G13850.1 (Glycine max), 5'ss of exon 22
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcactccgtatttatgct---acttttcttccaac----tgtgacatggttataaataacccggccacaacttctcttcag---------------
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ATGGGTTACGCACGAAGGAAACCGAGAGAGTTCTTGTCCTGGCTGCCACTAACAGGCCTTTTGACCTTGACGAGGCTGTCATAAGGAGGATGCCAAGAAGgtgagtacctttattcaactgtgcttcaattccccttccaatattttgtaaaagggggagggaccagcataagttaaccttttgtaatatttgttttttgcag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: GLYMA06G17940.1 (Glycine max), 5'ss of exon 24
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcact-----ccgtatttatgctacttttcttc---caactgtgacatggttataaataacccggccacaacttctcttcag------------------------------------------------
|||| | | ||||| || | || || ||||| |||||||| |||||||||||||| ||||| || || |||||||| | ||||||| || |||||| || | || | | | || | ||||| || | | || | || | || | |
ATGGCTTACGCACAAAGGATACCGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTAGATGAGGCTGTCATACGGAGGCTGCCTCGGAGgtgaactccatgttcaactgcacttcaattccttttttttgctcttttttgggaagggagtggggtggtgggagtgggtaggatgttaatggaactaatttgtttgaagttttcttaatcatattggtcttctgcag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcactccgtatttatg--cta--cttttcttccaactgtgacatg---gttataaat------aacccggccacaacttctctt-cag
| ||||||| ||| | || | |||||||||||||| ||||| ||||| ||| |||| ||||| ||||| ||||||||| | || || | ||| | ||||||||| | || | || ||| ||||| || | ||||||| |||||| | || | | || | |||
ACGGTCTTACGACTCAGGAAAGGGAACGTGTTCTGGTCCTTGCAGCCACAAATCGGCCTTTTGACCTTGATGAGGCTGTTATTAGACGGTTGCCCCGTAGgtaaattataaatcgcttccttggactaagctttttttgttaaattgacatgacagttataggttgtgaaaattttgtggtattgacttctgcag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: AT4G02480.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaa---------ttgcactccgtatttatgctacttttcttcca-actgtgac-atggttataaataacccggccacaacttctcttcag
||||| | || ||||| || | |||||| ||||||||||| |||||||| || || |||||||| || ||||| |||||| | || |||| ||| ||||||||| || | ||| || | | || || || | | | || || || ||| | || | || |||||| | |||
ATGGTTTAAGAACAAAGGATAGAGAACGGGTTCTGGTACTCGCTGCCACCAACAGACCATTTGACCTAGACGAAGCTGTTATTAGACGGCTTCCCCGGAGgtaaaaccaccacttttccctctgt-tgtctgttagttgtgaagaatattgcaaccattgttgatcctctcctgcatactacttctgtgcag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 23
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgca-----ctccgtatttatgcta--cttttcttccaactgtgacatggttataaataacccggccacaacttctcttcag
| ||||| |||||||| || || |||||||||||||| ||||| ||||| ||||| || ||||| |||||||||||||| | || ||| | || |||||| || | || | | || ||| |||| || || || | | || | || | || ||||| |||
ACGGTCTGAGGACAAATGAAAAGGAACGTGTTCTGGTTCTTGCAGCCACAAATAGACCTTTTGACCTTGACGAGGCTGTCATTAGAAGGTTGCCTCATAGgtaatttatatatagcttccttgttggactaagctttctgtcaaattgacatgtcgtaacaagtt-tttggtattggcttctg--cag
upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 24
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 23
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcactccgtatttatgctacttttcttccaactgtgacatggttataaat-aacccggccacaacttctcttcag------------------------
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ATGGCCTACGTACAAAGGATAAAGAACGTGTATTGGTACTTGCCGCCACCAATAGGCCTTTTGACCTTGATGAGGCTGTTATTAGGAGGCTACCCAGGAGgtaaa---catcatatgattataatcccttgattt--gttgtg-tatgagtattagtcaacccagaaaaaccttaattccctactatgtatgttaactgccaacacMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76287385|gb|DV026953.1|DV026953EST: AATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAG GTTGATGGTTAACTTGCCAGATGCACCCAACAGAAAGAAGATTCTTAGCGT
genomic: AATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgca ... ttctcttcagGTTGATGGTTAACTTGCCAGATGCACCCAACAGAAAGAAGATTCTTAGCGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGTCTTAGGACAAAAGACAAAGAACGTGTTCTGGTACTTGCTGCCACTAATAGGCCATTTGATCTTGACGAGGCTGTTGTCAGGAGGCTCCCCAGGAGgtaaattgcactccgtatttatgctacttttcttccaactgtgacatggttataaataacccggccacaacttctcttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT