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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTTTGCTCAGCTGCAACAGGCCCTGAATACTGCATAAGAGTGCATAGCTGCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatatagattggtgggtgataatagaaacccacaaaagactgcatgcttaacctggtgcttgcttcttttcag

Basic information

species Zea mays
transcript GRMZM2G151905_T03
intron # 23
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76015952|gb|DT943122.1|DT943122
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|6020477|gb|AW065405.1|AW065405
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|5847025|gb|AW000104.1|AW000104
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|32837283|gb|CD976961.1|CD976961
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|32839265|gb|CD978946.1|CD978946
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|5739723|gb|AI947299.1|AI947299
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|60342170|gb|DN209143.1|DN209143
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|32837177|gb|CD976855.1|CD976855
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|5361050|gb|AI795665.1|AI795665
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|5762205|gb|AI967253.1|AI967253
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|32836438|gb|CD976116.1|CD976116
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|6563769|gb|AW231301.1|AW231301
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
EST: gi|32837702|gb|CD977380.1|CD977380
EST:     GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAG                         GTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA
genomic: GCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatataga ... ttcttttcagGTGCTGACAGACAGTTGAATCGCGGTATGACACAGCAGTGCAGTGCAGAGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTTTGCTCAGCTGCAACAGGCCCTGAATACTGCATAAGAGTGCATAGCTGCTTACTGGATTGTATGGAGCATTACGTGGAGCAGGCATTGCTTTGTGAGgtcatatagattggtgggtgataatagaaacccacaaaagactgcatgcttaacctggtgcttgcttcttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG