1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' |
ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaatctatatctgcttcatgaatcagttgtacttcagagctttttacagagttgggtggcagttgtcacttcttgccctaagctgtgacctgtg...
species | Zea mays |
transcript | GRMZM2G099056_T01 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCEST: gi|86469278|gb|DY235648.1|DY235648
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATTTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCEST: gi|50324254|gb|CO519380.1|CO519380
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCEST: gi|50324253|gb|CO519379.1|CO519379
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCEST: gi|166589654|gb|EG269509.1|EG269509
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: CAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCEST: gi|5608489|gb|AI902156.1|AI902156
genomic: CAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACCCTGACCEST: gi|5597302|gb|AI891400.1|AI891400
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCGATTAGCGCCATGTACAGGAGGTTGCAGAAGACACTTACCEST: gi|30032170|gb|CB834021.1|CB834021
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCEST: gi|31405680|gb|CD484412.1|CD484412
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACCEST: gi|30087811|gb|CB886017.1|CB886017
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
EST: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGG ATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
genomic: GATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaat ... aactgtgcagATTGATAAGTCAATTAGCGCCATGTACAGGAGGTTGCAAAAGACACTGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCGTTTCAGCTGGGATTATCAAAAACTGACCTAAGGAGGGTACTGAAATCCAGCTTATCTGGGgtaagtaaatctatatctgcttcatgaatcagttgtacttcagagctttttacagagttgggtggcagttgtcacttcttgccctaagctgtgacctgtg
- - - - - - - - - - - - - - - - - AAGGAG