1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' |
GGCTAACAGTGCTAAAACATGGAAGGAGGTCTGCTTTGCTTGTGTTGACGCGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagtaggagggcatacttgatgatttttccctagtctttgttttattgcaaagtttctatgatatatttctttctgacatacctgctcttttttttgtttag
species | Zea mays |
transcript | GRMZM2G057576_T01 |
intron # | 23 |
splice site | 5' |
intron type | U2 |
EST: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAG GTTGACGACCTGGAAGAAGTCAGTGAGTACTACCAGAACAGAGGATGCTTCEST: gi|32942182|gb|CF047001.1|CF047001
genomic: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagt ... ttttgtttagGTTGACGACCTGGAAGAAGTCAGTGAGTACTACCAGAACAGAGGATGCTTC
EST: CTGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAG GTTGATGACTTGGAAGAAGTCAGTGAGTEST: gi|32942004|gb|CF046823.1|CF046823
genomic: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagt ... ttttgtttagGTTGACGACCTGGAAGAAGTCAGTGAGT
EST: CTGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAG GTTGATGACTTGGAAGAAGTCAGTGAGTAEST: gi|211133338|gb|FL220146.1|FL220146
genomic: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagt ... ttttgtttagGTTGACGACCTGGAAGAAGTCAGTGAGTA
EST: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAG GTTGACGACCTGGAANAAGTCAGTGAGTACTACCAGAACAGAGGATGCTTCEST: gi|67024143|gb|CO452892.1|CO452892
genomic: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagt ... ttttgtttagGTTGACGACCTGGAAGAAGTCAGTGAGTACTACCAGAACAGAGGATGCTTC
EST: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAG GTTGACGACCTGGAAGAAGTCAGTGAGTACTACCAGAACAGAGGATGCTTCEST: gi|32942430|gb|CF047249.1|CF047249
genomic: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagt ... ttttgtttagGTTGACGACCTGGAAGAAGTCAGTGAGTACTACCAGAACAGAGGATGCTTC
EST: CTGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAG GTTGATGACTTGGAAGAAGTCAGTGAGTA
genomic: CGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagt ... ttttgtttagGTTGACGACCTGGAAGAAGTCAGTGAGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCTAACAGTGCTAAAACATGGAAGGAGGTCTGCTTTGCTTGTGTTGACGCGGAGGAGTTCCGTCTTGCACAAATATGTGGTCTCAATATTATTGTTCAGgtatacaagtaggagggcatacttgatgatttttccctagtctttgttttattgcaaagtttctatgatatatttctttctgacatacctgctcttttttttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG