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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGCAACTTTTCTTGCATTTCATCCCCAAGATAACAACATAATTGCAATTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatggtggctttgtttttctttcattgcacagatagaagttaagtatgacttatttgctctttgtacag

Basic information

species Zea mays
transcript GRMZM2G030422_T03
intron # 23
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G030422_T03 (Zea mays), 5'ss of exon 23
lower sequence: LOC_Os03g14980.1 (Oryza sativa), 5'ss of exon 22
GGCAGCAACTTTTCTTGCATTTCATCCCCAAGATAACAACATAATTGCAATTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattca------tggtggctttgtttttcttt--cattgcacagatagaagttaagtatgacttattt--------gctctttgtacag
||| ||||| |||||||| || ||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||        |  |||| ||| | | | ||    ||  | | |  | |   |  |   |   ||||          |||||| ||||
GGCGGCAACGTTTCTTGCTTTCCATCCTCAAGATAACAACATTATAGCAATTGGAATGGATGACTCAACCATCCAAATCTACAATGTTCGAATTGATGAGgtattagcacatctaatggcattgctctgcgttattcttataaaaaatggaacaagattcaatcaattttttttttgattctttgcacag

upper sequence: GRMZM2G030422_T03 (Zea mays), 5'ss of exon 23
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 5'ss of exon 21
GGCAGCAACTTTTCTTGCATTTCATCCCCAAGATAACAACATAATTGCAATTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtat-tcatggtggctttgtt------------tttctttcattgcacagatagaagttaagtatgacttatttgctctttgtacag--------------------------------------------
 ||||| |||||||||||||||||||| ||||| ||||| || ||||| || |||||||| || || || || || || |||||||| ||  | |||||||||| | ||   | | |||               || | | |||   || |     ||| | |     |   | | | ||  || |                                             
AGCAGCTACTTTTCTTGCATTTCATCCACAAGACAACAATATCATTGCTATCGGAATGGAAGATTCGACAATTCAGATTTATAATGTTCGTGTGGATGAGgtatgttatcaagtccttgccagataagttgcgcttttgtgatttgtcacacttgtgttga-tgcatatgtctcggttttaatataagactgtcgttgatacgcttaataagatttctctgctgttcacag

upper sequence: GRMZM2G030422_T03 (Zea mays), 5'ss of exon 23
lower sequence: PP1S316_34V6.1 (Physcomitrella patens), 5'ss of exon 21
GGCAGCAACTTTTCTTGCATTTCATCCCCAAGATAACAACATAATTGCAATTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattc-atggtggctttgtttttctttcattgcacagatagaagttaagtatgacttatttgctctttgtacag-------------------------------------------
 ||||| ||||||||||| || ||||||||||| |||||||| ||||| || |||||||| || ||||| || || || |||||||| ||  | |||||||||||  |    | | || ||| | | | ||  | |  |   | ||| | |   | |  |  | |  |  |  ||                                           
AGCAGCTACTTTTCTTGCGTTCCATCCCCAAGACAACAACATCATTGCCATAGGAATGGAGGATTCAACAATACAGATTTATAATGTTCGTGTAGATGAGgtattttaccaggccgttctttctttgtgatctcccgtacctatgttgatttgtattcgtcagtttgtattctagatcccgaataatgtgcctaattagagctttctgctgttggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211016182|gb|FL013386.1|FL013386
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGNCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016174|gb|FL013378.1|FL013378
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016178|gb|FL013382.1|FL013382
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211018955|gb|FL013387.1|FL013387
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016172|gb|FL013376.1|FL013376
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|37422204|gb|CF648808.1|CF648808
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016173|gb|FL013377.1|FL013377
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGNCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016170|gb|FL013374.1|FL013374
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211018956|gb|FL013388.1|FL013388
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016176|gb|FL013380.1|FL013380
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|31360482|gb|CD444839.1|CD444839
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016181|gb|FL013385.1|FL013385
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016177|gb|FL013381.1|FL013381
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|211016179|gb|FL013383.1|FL013383
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|22473365|gb|BU037845.1|BU037845
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
EST: gi|76010934|gb|DT938104.1|DT938104
EST:     TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAG                         GTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT
genomic: TTGGAATGGATGACTCAACCATCCAAATCTATAATGTCCGAATTGATGAGgtattcatgg ... ctttgtacagGTCAAAAGCAAGCTCAGAGGTCACTCTAAGAGAATCACAGGTCTTGCCTTT