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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTGTTGAGAGCACTTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcattttatttatctaggcttgtcataagtcaaacttgtttagctttggctatcaatatctaaaaagttgtatagttagacaacatagtttggca...

Basic information

species Zea mays
transcript GRMZM5G824405_T01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 21
GCTGTGTTGAGAGCACTTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcattttatt-tatctaggcttgtcataagtcaaacttgtttagctttggctatcaatatctaaaaagttgtatagttagacaacatagtttggca
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GCTGTGCTAAGAGCACTATATGCATATTTTGCGGATAAACCACTGGAGGAACTTCCTAACATTGAGgtgagacaacgttttgcattttatatcactgctaccctagagcaccatgcgcgtattttgcatttttgctcatc---atgactgaaaatttttgctccag-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78022287|gb|DV490674.1|DV490674
EST:     TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: gi|5714261|gb|AI944246.1|AI944246
EST:     TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: gi|32930565|gb|CF035377.1|CF035377
EST:     TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: gi|211455219|gb|FL443686.1|FL443686
EST:     TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: gi|78021450|gb|DV489837.1|DV489837
EST:     TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: gi|12968557|gb|BG265503.1|BG265503
EST:     AAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: AAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: gi|5714269|gb|AI944254.1|AI944254
EST:     TTTATGCATACTTTGCGGCCAAACCGCTTGAGGAAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
EST: gi|67015674|gb|CO444423.1|CO444423
EST:     TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAG                         ATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA
genomic: TTTATGCATACTTTGCGGACAAACCGCTTGAGGAAGTCCCAAATATTGAGgtgaggcatt ... gttcctgcagATACCTCTACATACAATAATTGAGATACAAATGGGTGTTGCTGGTGTTCAA