Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTTCGTCCGGCAAGCCAGCTTAATAATGATAACCCATCGGTTATGCATTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAGgtatctgactgtctatgctgctcattctgcaatggtatacaaagctgctaccttattattcacaagttacattcag

Basic information

species Zea mays
transcript GRMZM2G470438_T02
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G470438_T02 (Zea mays), 5'ss of exon 22
lower sequence: LOC_Os03g06900.1 (Oryza sativa), 5'ss of exon 20
ATTTTTCGTCCGGCAAGCCAGCTTAATAATGATAACCCATCGGTTATGCATTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAGgtatctg-actg-tctatgctgctcatt--ctgcaatggtatacaaagct--gctaccttattattcacaagttacattcag------------------
|  |||| ||| ||    ||  ||| ||| |   |  || | ||| || || |||||||||| |||||||||||||||||||   || | ||||||||||||  ||| |||  ||  |  ||   |     ||  |||  |  |||   |  |||  | |   |   | ||   | |   |                   
AGCTTTCATCCAGCCGTGCAATTTACTAACGGACAAACACCTGTTGTGAATCCTCAAGGTTTTCGTTCAACCCATACCCAAAGCTCAGGAAATGCATCAGgtgactgtactactcagtaatgtctacaaattgttatgcaagccaatcttcagctggcctggcaacgaaaaagaagaggtaatgcaagctcatgaattga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148978926|gb|EE026382.2|EE026382
EST:     TTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAG                         ATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA
genomic: TTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAGgtatctgact ... ttacattcagATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA
EST: gi|31910505|gb|CD651457.1|CD651457
EST:     CAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAG                         ATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA
genomic: CAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAGgtatctgact ... ttacattcagATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA
EST: gi|31910507|gb|CD651458.1|CD651458
EST:     GGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAG                         ATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA
genomic: GGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAGgtatctgact ... ttacattcagATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA
EST: gi|60357566|gb|DN224539.1|DN224539
EST:     TTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAG                         ATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA
genomic: TTCTCAAGGTTTCCGTTCAACCCATACCCAAAATCCAAGTAATGCATCAGgtatctgact ... ttacattcagATGCAGGTCAAGTGCTGTGCACCTCATGTGGAGCGCTTTGCATATCACGAA