1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' |
TGCTTTTGTATTGGACCATCAGTGCTAATGTGCTATGCCTTTGTGTTCTTATTGGCAGGATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAGgtctgtgtaggatcagccacattatgacattatgtgtttgtcgttttgaacagatggtaccgatttaagtgtctcactaactcttttatttcagtggaac...
species | Zea mays |
transcript | GRMZM2G162531_T02 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: GATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAG GTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTAEST: gi|89760346|gb|DY688794.1|DY688794
genomic: GATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAGgtctgtgtag ... tttcctgtagGTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTA
EST: AGGATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAG GTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTAEST: gi|8367262|gb|BE050207.1|BE050207
genomic: AGGATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAGgtctgtgtag ... tttcctgtagGTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTA
EST: GAGTTCACGACGTTGGACTCAGCGAGAAAG GTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTAEST: gi|32827264|gb|CD966942.1|CD966942
genomic: GAGTTCACGACGTCGGACTCAGCGAGAAAGgtctgtgtag ... tttcctgtagGTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTA
EST: GATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAG GTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTA
genomic: GATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAGgtctgtgtag ... tttcctgtagGTGGTCGAGCTGAAGGCTTTCAACAAGTTTGAGAACACATCTGATGCCCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTTTGTATTGGACCATCAGTGCTAATGTGCTATGCCTTTGTGTTCTTATTGGCAGGATCTATGGAAGGAGTTCACGACGTCGGACTCAGCGAGAAAGgtctgtgtaggatcagccacattatgacattatgtgtttgtcgttttgaacagatggtaccgatttaagtgtctcactaactcttttatttcagtggaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG