Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAAgtattactctatcctttggatcttgatgcaaacaccagttaccagctagcaacaactgaattgctttcaaggatgatagttttaagttaaacatttacaa...

Basic information

species Zea mays
transcript GRMZM2G158043_T02
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G158043_T02 (Zea mays), 5'ss of exon 22
lower sequence: LOC_Os04g08270.1 (Oryza sativa), 5'ss of exon 13
GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAAgtattactctatcctttggatcttgatgcaaacaccagttac--cagcta---gcaacaactgaattgctttca----aggatgatagtt----ttaagttaaacatttacaa------------------------------------------
|||||||| || || ||||||||||||||||||||  |||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||  ||  ||| | || ||||||| ||||| |||||    ||  ||   |||||   |||||| | |  |     |||  ||| ||    ||   || |||| |||                                             
GGAATACCTTTCTTCCATGCTGGTGATGAGATACTGAGATCTAAGTCACTTGATCGAGATTCATATAACTCTGGTGATTGGTTTAACAAgtaataaactgccctcttgaccttgatgaaaacatcagttgttgcaattaattgcaacgtttgaatttcctctatatatggaaaataattcgatttgctttgaacagttaattggtattaacatctgactatataccgtttcatccttttctaag

upper sequence: GRMZM2G158043_T02 (Zea mays), 5'ss of exon 22
lower sequence: GLYMA10G34080.1 (Glycine max), 5'ss of exon 23
GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAAgtatta-ctctatcctttggatcttgatgcaaacaccagttacc--agctagca-acaactgaattgctttcaaggat--gatagtttta---agttaaacatttacaa------------------------------------------------------------------------------------------
|| ||||||||||||||| |||| ||||||||||| || || || || || ||||||||||| ||  | |||||||||||||| |||| |||||  || |||    |     ||  | |       | ||  |  |  ||| | |  |   | ||  ||  || | |   |||||| ||   | | |||   |   |                                                                                           
GGTATACCATTTTTTCATTCTGGAGATGAGATACTCCGCTCAAAATCACTGGATCGAGATTCTTACAATTCTGGTGATTGGTTCAACAGgtattttctatatataataatcatttttactgttttgactttgccaaattagtatatcatctacttcattataatgttctaatagttatattcattcaaatcctgttattttcctccttgtaccaaaaaaaaaatcctgttattttccattgacttagtgaaacttacaatgtgtttccttgtgcactctcaatttcag

upper sequence: GRMZM2G158043_T02 (Zea mays), 5'ss of exon 22
lower sequence: AT5G04360.1 (Arabidopsis thaliana), 5'ss of exon 23
GGAATACCATTTTTTCATGCTGGTGATGAGATACTACGATCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAAgtattactctatcctttggatcttgatgcaaacac-cagttaccagctagcaacaactgaattgctttcaaggatgatagttttaagttaaacatttacaa
|| || ||||| || |||||||| |||||||| ||||| || || || |||||||||||||| ||  |||| ||||| ||||| || | || || |  | || ||    |  |||  ||    | | | ||  |  |  |  | ||||| | |   | || |   | |  ||||                
GGTATTCCATTCTTCCATGCTGGGGATGAGATTCTACGCTCGAAATCACTTGATCGAGATTCTTACAACTCCGGTGACTGGTTCAATAGgt-ttgcgttttcgttcttgtaatgaaacatttcctctgataatatatttcccctactga-tcgacatgaacggcaacaagtttag---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32852337|gb|CD992018.1|CD992018
EST:     TCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAA                         GATTGATTTTACCTATGAAACAAACAATTGGNGGTGTTGGGCTTCCACCAA
genomic: TCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAAgtattactct ... ttgtttgaagGATTGATTTTACCTATGAAACAAACAATTGG-GGTGTTGGGCTTCCACCAA
EST: gi|32867450|gb|CF007132.1|CF007132
EST:     TCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAA                         GATTGATTTTACCTATGAAACAAACAATTGGGGTGTTGGGCTTCCACCAAG
genomic: TCTAAGTCGCTTGATCGAGATTCATATGACTCTGGTGATTGGTTTAACAAgtattactct ... ttgtttgaagGATTGATTTTACCTATGAAACAAACAATTGGGGTGTTGGGCTTCCACCAAG