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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag

Basic information

species Zea mays
transcript GRMZM2G157621_T01
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: LOC_Os07g47530.2 (Oryza sativa), 5'ss of exon 22
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtact---tgtgcaacgttatactca--tcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag
||| |||||||| || || |||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||||   | |  |  | ||| |  |  || || |||||| | || | || ||||  ||   |||||||| ||       | | | | ||||
TGGCCCACCTGGTACGGGGAAGACCATGCTTGCTAAAGCTGTTGCAACAGAGGCTGGCGCCAATTTTATCAACATATCAATGTCTAGTATTGCTTCAAAGgtactccctttatagagctatgcagagttccagattgttcac-atcttgaatactcctt---ttgctgatatc-------tgattctgacag

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: GLYMA10G02400.1 (Glycine max), 5'ss of exon 21
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgtgcaacgttatactcatcaagtttgttcccgatttggagtactt-attactttgctgatttcaaccctgtaactataacag
||| || |||||||| || || || |||||||| || ||||| ||||| || ||||| || ||||| || ||||| |||||||| |||||| ||||||||||| |  ||        ||||  |     | ||        | |  | ||| | |     |   | |       |||   | |  |||
TGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGgtattaatgttgtaagttacttttttttgtggtgtatttccttgtatgcttcagtgacaagaaaaatatggttttgt--ttgttgcag

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: GLYMA02G17410.1 (Glycine max), 5'ss of exon 17
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag
||| || |||||||| || || || |||||||| || ||||| ||||| || ||||| || ||||| || ||||| |||||||| |||||| |||||||||||    |         ||||  |   |||   |      ||| |    | | |     |   |         |||   | |  |||
TGGGCCCCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCAAAGgtatcaatattgtaaattactttttttgttgtgtatttccttgtatgcttcagttacaagaaaaacatggttttgt--ttgttgcag

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: AT1G02890.1 (Arabidopsis thaliana), 5'ss of exon 21
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag
||| || ||||| || || ||||| ||||| || |||||||| ||||| |||||||| || || |||||||| || |||||||| |||||| ||||||||||| |  |          ||| |  | | ||   |    | |  |||  ||  |       |    |  ||     |  |     ||
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgat---------cacttaaaacggttac-ctgactctatagtgttttctttgagattagacttgacttgagatttcgtgtag

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: AT1G02890.2 (Arabidopsis thaliana), 5'ss of exon 21
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgt-----gcaacg-ttat---actc-atcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag---
||| || ||||| || || ||||| ||||| || |||||||| ||||| |||||||| || || |||||||| || |||||||| |||||| ||||||||||| |  |       |||| |||    |||| ||   ||||  |      || || |     | |  || |   |         || |     | |    
TGGACCGCCTGGTACGGGGAAGACAATGCTGGCAAAAGCTGTAGCAACCGAGGCTGGGGCAAACTTTATCAATATTTCAATGTCCAGCATTACTTCAAAGgtattgatcacttaaaacggttacctgactctatagtgttttctttgagattagacttgacttgagatttcgtgtagtggtttggtgagggagagaagta

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: AT1G62130.1 (Arabidopsis thaliana), 5'ss of exon 21
------------TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag
            ||| ||  |||| || || |||||||||||||| || || || ||||| || |||||||||||  | |||||||| |||||||||||  |  |    |   ||    || || |||  ||||  | | ||| | | ||   |    |  | |    | || |  | ||||   || |          
AATTCTCTTATTTGGACCTTCTGGAACTGGAAAGACCATGCTTGCAAAGGCAGTGGCAACGGAAGCTGGTGCTAACCTCATCAACATGTCAATGTCAAGGgtaac----agaatatccttgaaaagttggactctaccaatttatacacggaatctcttgttcaaacttgtgttcttctcaatattgcag---------

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: AT4G24860.1 (Arabidopsis thaliana), 5'ss of exon 21
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctga--tttcaaccctgtaactataacag
||| || ||||| || || |||||||||||||| ||||| || ||||  || |||| ||| || || |||||||| ||||||||||||||  | || ||||||  ||   ||   | ||   |  |||||   | |||||||  |      ||   |||    |  ||     | | | | ||   |||
TGGACCTCCTGGAACTGGAAAGACCATGCTTGCAAAAGCAGTGGCAAAGGAAGCTGATGCGAACTTCATCAACATCTCAATGTCAAGCATCACATCTAAGgtaactg---aatactctatgaa--aagttc--taccgatttacacacgggatctttttttcaaacttgtgttcttcttaatactgcag

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 5'ss of exon 22
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgtacttgt------gcaacgttatactcatcaagtttgttcccgatttggagtacttattacttt--------gctgatttcaaccctgtaactataacag
||| || ||||| || || ||||| |||||||| || |||||||| || || |||||||| || || ||||| || ||||||||||||||  | || |||||  |  |      | | | |  |  |  |     ||| || | ||   | ||  |||||  |||        |||| ||||    || |   | |  |||
TGGCCCCCCTGGAACAGGCAAGACAATGCTTGCTAAGGCTGTTGCTACTGAAGCTGGTGCAAACTTCATCAATATTTCAATGTCAAGCATCACATCTAAGgttatcattgataagtagcttcttttttctatcccttgatctctatagtgggttgttatttttttttttctcagctggtttctcatct-ttcttgttgcag

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: Vv07s0005g00200.t01 (Vitis vinifera), 5'ss of exon 21
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgta--cttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaacta-taacag
||| || ||||| || || || || |||||||| || || |||||||| ||||| ||||| ||||||||||||||||||||||| || ||  |||||||||||    |||||| |   ||  | |  | |    |  |   |||| |   ||| ||       |  ||   | ||||  | |  |  |||
TGGGCCTCCTGGGACTGGAAAAACAATGCTTGCGAAGGCGGTTGCAACTGAGGCAGGTGCAAATTTTATCAACATATCAATGTCTAGTATCACTTCAAAGgtaaatatgtgcatcaaaatggtgactatgcagctctct--tttgcaagtcttgttttgaaaatatttgacatcctgatattgcttgcag

upper sequence: GRMZM2G157621_T03 (Zea mays), 5'ss of exon 22
lower sequence: EFJ31084 (Selaginella moellendorffii), 5'ss of exon 9
TGGTCCACCTGGCACCGGTAAGACCATGCTTGCCAAAGCTGTTGCAACAGAGGCTGGTGCTAATTTTATCAACATATCAATGTCAAGCATTGCTTCAAAGgta--cttgtgcaacgttatactcatcaagtttgttcccgatttggagtacttattactttgctgatttcaaccctgtaactataacag
|||||| || || || ||||||||||||||||| || || ||||| |||||||||||||| ||||| ||||| || |||||||| |  ||||| || || |||  |   | | |||| ||| |  ||||||||    ||| |||          || ||| || |                        
TGGTCCTCCAGGAACTGGTAAGACCATGCTTGCTAAGGCGGTTGCTACAGAGGCTGGTGCAAATTTCATCAATATTTCAATGTCCACAATTGCATCTAAAgtaagcacttaccacgtgatagtgttcaagttta---ccgtttt---------ctttcttcgcag------------------------