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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgttagtcactgccagccacttcgattgggtggagtagacaactgttggactatggttgaaccatctttcttttttttcgcttgtacag

Basic information

species Zea mays
transcript GRMZM2G155384_T03
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 22
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 5'ss of exon 23
TGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgttagtcactgccagccacttcgattgggtggagtagacaactgtt--ggactatggttgaaccatctttcttttttttcgcttgtacag
||| |||||||| || ||  | || || ||||| |||||||| |||||||| |||||||||||||||||||| || |||||||| ||| |||| ||||||||||| |   |  |   |    | || ||   |||  | | | | || ||| ||  | ||||   ||||          | | || | |  |||||||
TGGAGGCCTTGTTACTGTATTGCATGCTTGCCTCGATATGAAATCCACCATTCTAGGGAAATACCACTACATTCTTTACATTATCGTCTTGGCGATGCAGgtatggtccatt-tagttaattgacagttttgttgc-tagtgcaaactactatttggtactaaaattgagt--------tctcttcttgtatgtacag

upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 22
lower sequence: EFJ26022 (Selaginella moellendorffii), 5'ss of exon 22
TGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgttagtcactgccagccacttcgattgggtggagtagacaactgttggactatggttgaaccatctttcttttttttcgcttgtacag
 |  ||| ||||  ||||||| || |||||| | ||||||||  ||| |||||||||||| ||||||||| | ||||||  | | || || ||||||||||||   ||| |  |   | |      ||| | |    ||| | ||  |||                  |  ||||||||  ||||| |  |     
CGCCGGCATTGTTGCCGTTCTTCATGCGTGCTTGGATATGAAAGCCATCATCCTAGGGAAGTACCACTACGTTCTCTACTATCTCGTTCTAGCAATGCAGgtaaaattgctcat--gtccttttttctttgttc---tgggggaggtaac-----------------gctgtctttcttccttttctccag-----

upper sequence: GRMZM2G155384_T03 (Zea mays), 5'ss of exon 22
lower sequence: EFJ14427 (Selaginella moellendorffii), 5'ss of exon 22
TGGGGGCCTTGTAACCGTTCTCCACGCGTGCCTTGATATGAAGTCCACCATCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgttagtcactgccagccacttcgattgggtggagtagacaactgttggactatggttgaaccatctttcttttttttcgcttgtacag
    ||| || |  ||||||| || |||||| | ||||||||  ||| |||||||||||| ||||||||| | ||||||  | | || || ||||||||||||   |||   |    | |      ||| | |    ||| | ||  |||                  |  ||||||||  ||||| |  |     
CTCCGGCATTATTGCCGTTCTTCATGCGTGCTTGGATATGAAAGCCATCATCCTAGGGAAGTACCACTACGTTCTCTACTATCTCGTTCTAGCAATGCAGgtaacattgc--gcatgtccttttttctttgttc---tgggggaggtaac-----------------gctgtctttcttccttttctccag-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211100370|gb|FL070848.1|FL070848
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|60347371|gb|DN214344.1|DN214344
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|6031296|gb|AW076153.1|AW076153
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|5847123|gb|AW000202.1|AW000202
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|32867559|gb|CF007241.1|CF007241
EST:     TCCTAGGGAGATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|18175836|gb|BM351006.1|BM351006
EST:     ACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: ACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
EST: gi|211100371|gb|FL070849.1|FL070849
EST:     TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAG                         CCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT
genomic: TCCTAGGGAAATACCACTACATCCTCTACATTATTGTCCTGGCAATGCAGgtatgtttgt ... gcttgtacagCCCAGGATGCTTTTGACTGTCGACGAGGATCTGAAGCCCCTGTCAGTACCT