1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatgctttacctagctattcatttccaaatacatgcaggtcttctgtaagggcactgtttatgattttttgttgttgttgttgttgttgactag
species | Zea mays |
transcript | GRMZM2G151905_T03 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|37361410|gb|CF602699.1|CF602699
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|6020477|gb|AW065405.1|AW065405
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTGGAGATGGTGTTAAGAEST: gi|211283755|gb|FL354685.1|FL354685
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTACTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGKGTTAAGAEST: gi|32837283|gb|CD976961.1|CD976961
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|32839265|gb|CD978946.1|CD978946
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|5739723|gb|AI947299.1|AI947299
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|60342170|gb|DN209143.1|DN209143
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|32837177|gb|CD976855.1|CD976855
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: AAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|5762205|gb|AI967253.1|AI967253
genomic: AAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: TTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|6563769|gb|AW231301.1|AW231301
genomic: TTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGAEST: gi|32837702|gb|CD977380.1|CD977380
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
EST: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAG GTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
genomic: ATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatg ... tgttgactagGTAAAGGATTCAGATCCTATCAAACAAACATCGCTAGAGATGGTGTTAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGATATCACAAGCTCTTCATGGATAGGCAACGATGGTTCAGGTTATTCCAACACTTCAAGCAAAGAGCTGAGAAAGCGCCAGgtatagcatgctttacctagctattcatttccaaatacatgcaggtcttctgtaagggcactgtttatgattttttgttgttgttgttgttgttgactag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA