1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GATTCTTGTGGAAGCTTTCAAAAGGATGCAGGTCATTGAGCATGAGGAACCTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGGTATCTCATgtgcattctgcttcttactgtctattttgaactatgcactatggtgctcttttggaaacctgatatatttacagatccattttcacatcggcccattcct...
species | Zea mays |
transcript | GRMZM2G095348_T02 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACA-G-------- GCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAAEST: gi|32846872|gb|CD986553.1|CD986553
genomic: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGGTATCTCATgtgcattctg ... ttgttcttagGCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAA
EST: TGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACA-G-------- GCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAAEST: gi|60347180|gb|DN214153.1|DN214153
genomic: TGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGGTATCTCATgtgcattctg ... ttgttcttagGCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAA
EST: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACA-G-------- GCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAAEST: gi|211347064|gb|FK984260.1|FK984260
genomic: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGGTATCTCATgtgcattctg ... ttgttcttagGCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAA
EST: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACA-G-------- GCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAAEST: gi|71443012|gb|DR824062.1|DR824062
genomic: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGGTATCTCATgtgcattctg ... ttgttcttagGCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAA
EST: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACA-G-------- GCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAA
genomic: CTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGGTATCTCATgtgcattctg ... ttgttcttagGCATCGGAAGAGAAGGAAATGCATAACACAGATGATGCTGATGAACATGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCTTGTGGAAGCTTTCAAAAGGATGCAGGTCATTGAGCATGAGGAACCTGAAGATGCAGCTGAGGAAAATGGAGAACCTGATCAACAGGTATCTCATgtgcattctgcttcttactgtctattttgaactatgcactatggtgctcttttggaaacctgatatatttacagatccattttcacatcggcccattcct
- - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA