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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTGACTATGAGGACTTCATTAGAGACTTAACAAGACAACTTTGTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAGgtgaagttttcttattaggcctacatacattaggaagttaggaaccgaacttagattagctggtgtgaggtgtttggcgtacacttccattatgcacgtt...

Basic information

species Zea mays
transcript GRMZM2G086093_T02
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G086093_T03 (Zea mays), 5'ss of exon 20
lower sequence: LOC_Os03g05330.1 (Oryza sativa), 5'ss of exon 28
TTCTGACTATGAGGACTTCATTAGAGACTTAACAAGACAACTTTGTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAGgtgaagttttcttattaggccta---catacattaggaagttaggaaccgaacttagattagctggtgtgaggtgtttggcgtacacttccattatgcacgtt
||| || ||||||||||||||||| ||||||||||| ||||| |||||  | ||||| |||||||||||||||||| | ||||| |||||||||||   || ||||| | || | ||       | ||  |||||  |   || |   |   || | | || | ||                               
TTCGGATTATGAGGACTTCATTAGGGACTTAACAAGGCAACTCTGTCGACTATCTCCTGCCAGAGTCGACAGCTACTTTGAATCTGCTATCCAGgtaccgtcttcttgt-agtcatagcctgcgctttgtgaagtatg---ccaacactgattttgtttgtttcag-------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67025348|gb|CO454097.1|CO454097
EST:     GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAG                         GCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG
genomic: GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAGgtgaagtttt ... tgtgttttagGCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG
EST: gi|24769352|gb|CA404481.1|CA404481
EST:     GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAG                         GCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG
genomic: GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAGgtgaagtttt ... tgtgttttagGCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG
EST: gi|67021578|gb|CO450327.1|CO450327
EST:     GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAG                         GCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG
genomic: GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAGgtgaagtttt ... tgtgttttagGCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG
EST: gi|60354946|gb|DN221919.1|DN221919
EST:     GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAG                         GCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG
genomic: GTCGGTTGTCTCCCGCCAGAGTCGACAGCTACCTAGAATCGGCTATCCAGgtgaagtttt ... tgtgttttagGCATTCGATGCACCTTGGCCAGTCATAAGAGCAAACGCAGTTTGTTTGGTG