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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTTAGGCTTCGTCATATTGCTCTGCATCGTGCTGCTGGCGATATACAAGACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAGgtttgtttgtttgtttgtttgtgcatatgaattgcactgcagtgtcccaggaggactcatctatcactttccttgaccacattgcag

Basic information

species Zea mays
transcript GRMZM2G082855_T02
intron # 22
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G082855_T02 (Zea mays), 5'ss of exon 22
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 5'ss of exon 23
ATCTTAGGCTTCGTCATATTGCTCTGCATCGTGCTGCTGGCGATATACAAGACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAGgtttgtttg---tttgttt----------gtttgtgcatatgaattgcactgcag------tgtcccaggaggactcatctatcactttccttgaccacattgcag
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ATCTTAGGCTTTATCATATTGCTCTGCGTTCTGCTGTTGGCTATATATAAAACAAATCAACCACAGCCACTTGTCAAAGGATCCGATAAGCCAGTGCAAGgtatgtgtgcgctatatctcacccctccagttgtcgtcgatgaaattaacagcaagtatgctggcataatggaattcatcttaaccttttcttaatcatatt-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78117622|gb|DV536009.1|DV536009
EST:     GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAG                         GGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG
genomic: GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAGgtttgtttgt ... cacattgcagGGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG
EST: gi|71431744|gb|DR812794.1|DR812794
EST:     GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAG                         GGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG
genomic: GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAGgtttgtttgt ... cacattgcagGGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG
EST: gi|149088301|gb|EE177395.2|EE177395
EST:     GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAG                         GGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG
genomic: GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAGgtttgtttgt ... cacattgcagGGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG
EST: gi|148957564|gb|EC903660.2|EC903660
EST:     GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAG                         GGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG
genomic: GACCAACCAGCCACAGCTACCTGAGAAAGCATCCGACAAGCCAGTGCAAGgtttgtttgt ... cacattgcagGGCCACCAAAGCTGGTGGTTCTTCAGATGGACATGGCCGTGCACACGTACG