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GCAGCTGCTGTAGCTGCTCTATCCTCTGTGCTGACTGCTGAGCAATCTGGATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgcaccttccttttcaatttatcattcattaaagaatagcttggcaaatgtagggggcgaaggttcttactttctttggattctcaaatatgt...
species | Zea mays |
transcript | GRMZM2G047310_T02 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: ACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|89252837|gb|DY624623.1|DY624623
genomic: ACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|211011730|gb|FL062983.1|FL062983
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGGTCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|67017477|gb|CO446226.1|CO446226
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|60346198|gb|DN213171.1|DN213171
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: GATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|60393923|gb|DN226793.1|DN226793
genomic: GATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|74240490|gb|DT648404.1|DT648404
genomic: ACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|67014678|gb|CO443427.1|CO443427
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|60350996|gb|DN217969.1|DN217969
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: TCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|6465597|gb|AW191192.1|AW191192
genomic: TCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|93281335|gb|EB673599.1|EB673599
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|60394045|gb|DN226915.1|DN226915
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|71760290|gb|DR958227.1|DR958227
genomic: ACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|149103859|gb|EE289270.2|EE289270
genomic: ATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTCEST: gi|14243713|gb|BG841420.2|BG841420
genomic: ATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
EST: GATCCAAAGCTAGCAACACAGCATATAAGACTG ATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
genomic: GATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgc ... atcaatgcagATGTCGACCGGATTGTCATAACTCCAGCTGGCCCATCAGGCCCATCTTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGCTGCTGTAGCTGCTCTATCCTCTGTGCTGACTGCTGAGCAATCTGGATCTTCAGAATTTCTACGATCCAAAGCTAGCAACACAGCATATAAGACTGgtagagctgcaccttccttttcaatttatcattcattaaagaatagcttggcaaatgtagggggcgaaggttcttactttctttggattctcaaatatgt
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