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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTGAAACCATTGATGATCTGAGAGCACTGCATGACAAGAAGGGACAGAAGATCCTGAGAAAACAACAAATGTATTCAGGTTTTAGGGACAAATTAAATgtaagttctgtgcaatttgtctgatatcttcattttttctagatgaatatggttttaaaaggtttgtttgatactttgatttgttttcctcatcaacatg...

Basic information

species Zea mays
transcript GRMZM2G025340_T02
intron # 22
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211018175|gb|FL213620.1|FL213620
EST:     TTCAGGTTTTAGGGACAAATTAAAT                         GCATGTCAAAAGGSACTGGACTTGAGATGGAAGAAGTTTCAGA
genomic: TTCAGGTTTTAGGGACAAATTAAATgtaagttctg ... ggatctgtagGCATGTCAAAAGGCACTGGACTTGAGATGGAAGAAGTTTCAGA
EST: gi|37396328|gb|CF635453.1|CF635453
EST:     AGATCCTGAGAAAACAACAAATGTATTCA-GTTTTAGGGACAAATTAAAT                         GCATGTCAAAAGGCACTGGACTTGAGATGGAAG-AGTTTTCAGTGAAATGC
genomic: AGATCCTGAGAAAACAACAAATGTATTCAGGTTTTAGGGACAAATTAAATgtaagttctg ... ggatctgtagGCATGTCAAAAGGCACTGGACTTGAGATGGAAGAAG-TTTCAGAGAAATGC
EST: gi|211018179|gb|FL213624.1|FL213624
EST:     AGATCCTGAGAAAACAACAAATGTATTCAGGTTTTAGGGACAAATTAAAT                         GCATGTCAAAAGGCACTGGACTTGAGATGGAAGAAGTTTCAGAGAAATGCG
genomic: AGATCCTGAGAAAACAACAAATGTATTCAGGTTTTAGGGACAAATTAAATgtaagttctg ... ggatctgtagGCATGTCAAAAGGCACTGGACTTGAGATGGAAGAAGTTTCAGAGAAATGCG