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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGCTCGAAACTGCAATACAAGATACTGAATCAGAGGCAAATTCTATGCTATTTCTTAACCAAAATGTTTTGCAGGAGTATCAAAACCGGCAACATGAGgtatcaaaatatgtctggttcatatgtgctggccagttagcaatggttatgttttactgtcttggtattattgctggcagaattatccattgagaacata...

Basic information

species Zea mays
transcript GRMZM2G440916_T02
intron # 21
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G440916_T01 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os05g51790.2 (Oryza sativa), 5'ss of exon 21
AGAGCTCGAAACTGCAATACAAGATACTGAATCAGAGGCAAATTCTATGCTATTTCTTAACCAAAATGTTTTGCAGGAGTATCAAAACCGGCAACATGAGgtatcaaaatatgtctggttcatatgtgctggccagttagcaatggttatg-ttttactgtcttggtat-tattgctggcagaattatccattgagaacata-
||| || ||   |||||| |||||||||||||| || |||||||||||||| |||||||| ||||||||||||  ||||||||||| |||||| | |||||||  |     |     ||  |  | |  |    | ||   | |   | |  ||  | |||     |||  ||   | |   |   |||  ||     |||  
AGAACTGGATTGTGCAATTCAAGATACTGAATCCGAAGCAAATTCTATGCTTTTTCTTAATCAAAATGTTTTGTTGGAGTATCAAAGCCGGCAGCGTGAGgtacaatggattaataagtgtacctctttt--ttatttcatactttctttacttccagtgttgcaatatgcataagttgttcagc-atcagtttgtctcatca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33092036|gb|CF052030.1|CF052030
EST:     CGGCAACATGAG                         ATAGAATCAATCTCAAATAAACTTAAGGATGATAAGGGTGAACATGAGATC
genomic: CGGCAACATGAGgtatcaaaat ... gattttacagATAGAATCAATCTCAAATAAACTTAAGGATGATAAGGGTGAACATGAGATC
EST: gi|78075394|gb|DV503828.1|DV503828
EST:     TATTTCTTAACCAAAATGTTTTGCAGGAGTATCAAAACCGGCAACATGAG                         ATAGAATCAATCTCAAATAAACTTAAGGATGATAAGGGTGAACATGAGATC
genomic: TATTTCTTAACCAAAATGTTTTGCAGGAGTATCAAAACCGGCAACATGAGgtatcaaaat ... gattttacagATAGAATCAATCTCAAATAAACTTAAGGATGATAAGGGTGAACATGAGATC
EST: gi|211323884|gb|FK953780.1|FK953780
EST:     CAAAACCGGCAACATGAG                         ATAGAATCAATCTCAAATAAACTTAAGGATGATAAGGGTGAACATGAGATC
genomic: CAAAACCGGCAACATGAGgtatcaaaat ... gattttacagATAGAATCAATCTCAAATAAACTTAAGGATGATAAGGGTGAACATGAGATC