Sequence
atgc intronic sequence ATGC exonic sequenceTGCTTATGAGTGATTCTCTGGGAGGGAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGATgtatgtactttggtcactgagtctatgtaccctgtcttttggatttgctttttgtcactgtttccatcaatgtggtcttgatatattagcttttccatat...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 21
lower sequence: LOC_Os04g57140.2 (Oryza sativa), 5'ss of exon 22
TGCTTATGAGTGATTCTCTGGGAGGGAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGATgtatgtactttggtcactgagtctatgtaccctgtcttttggatt-tgctttttgtcactgtttccatcaatgtggtcttgat--atattagcttttccatat-------
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TGCTGATGAGTGATTCTCTTGGAGGCAATGCGAAAACCTTGATGTTTGTGAATGTCTCACCAGCAGAGTCCAACCTGGAGGAGACTTACAATTCACTCATgtatgaatttctattgct---ccagtatacaagtctttttgtgttatgcccctggtgctcgtgtacacctgttgagtattgactggcattttttttcctccatcttgcag
upper sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 21
lower sequence: PP1S199_47V6.1 (Physcomitrella patens), 5'ss of exon 24
TGCTTATGAGTGATTCTCTGGGAGGGAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGATgtatgtact---ttggtcactgagtc-tatgtaccctgtctt----ttggatttgctttttgtcactgtttc-------catcaatgtggtcttgatatattagcttt---tccatat---------------------------------------
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TGCTTATGAGCGATTCTCTCGGTGGAAATGCGAAGACCCTCATGTTTGTAAATATCTCACCAGCAGAGTCTAATCTGGACGAGACCCATAATTCACTCTGgtgaggaacggactatttcttgagtcctgtcagttcactactaaaattcaatttgatgtttctcgatactccagagaggtaagaagggggtttccagtcattagtgataagtacgtagtgatttttttgattgacctttattgttggtgtattgtag
upper sequence: GRMZM2G423861_T02 (Zea mays), 5'ss of exon 21
lower sequence: PP1S83_25V6.1 (Physcomitrella patens), 5'ss of exon 23
TGCTTATGAGTGATTCTCTGGGAGGGAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGATgtatgtactt----tggtcactgagtctatgta--------ccctgtcttttggatttgctttttgtcactgtttccatcaatgtggtcttgatatattagcttttccatat-----------------------------------------------------------------
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TGCTCATGAGCGATTCTCTTGGTGGAAATGCGAAGACACTCATGTTTGTAAATATCTCACCGGCAGAGTCCAACCTGGATGAGACCCATAATTCACTCTGgtgagtaactgatctggctcgtgttcctttccaatttttatctttattttttcacttcacttttgatgtctctagattctaataaaggttcaa-agatggagatttctagatgtatgagttgatttgatttccagcctgaaaatgcttacttctgacttctgttgttgtattggtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211378041|gb|FL328240.1|FL328240EST: AATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGAT GTATGCTTCACGCGTTCGATGCATTGTTAATGATACGAGCAAGCATGTTGC
genomic: AATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGATgtatgtactt ... acccttgtagGTATGCTTCACGCGTTCGATGCATTGTTAATGATACGAGCAAGCATGTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGCTTATGAGTGATTCTCTGGGAGGGAATGCGAAGACCTTGATGTTTGTGAATGTTTCACCAGCAGAGTCTAACTTGGAGGAGACTTACAACTCGCTGATgtatgtactttggtcactgagtctatgtaccctgtcttttggatttgctttttgtcactgtttccatcaatgtggtcttgatatattagcttttccatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT