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GTCGCTCTTCGCTGCTTAGCAGCAGAAGGTGATGGATATGGGCTTCATGAAGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttttattctaaagggagaccactgtttgaaatatttcgtgcggtgtttttaaatgatctgttatggcag
species | Zea mays |
transcript | GRMZM2G348675_T02 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|89106042|gb|DY576259.1|DY576259
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|6564229|gb|AW231851.1|AW231851
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGEST: gi|33098458|gb|CF058418.1|CF058418
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|71444755|gb|DR825805.1|DR825805
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|60338136|gb|DN205109.1|DN205109
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|31611836|gb|CD568458.1|CD568458
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|211241122|gb|FL071392.1|FL071392
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|71769927|gb|DR967864.1|DR967864
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|60337110|gb|DN204083.1|DN204083
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|91056201|gb|EB166619.1|EB166619
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|6021399|gb|AW066327.1|AW066327
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|60394400|gb|DN227270.1|DN227270
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|78077107|gb|DV505541.1|DV505541
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|21843367|gb|BQ703948.1|BQ703948
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: GATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCACCCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|6526938|gb|AW216185.1|AW216185
genomic: GATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: GATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCNCGGCTTGEST: gi|211426538|gb|FL064839.1|FL064839
genomic: GATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|6012524|gb|AW061961.1|AW061961
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: GTCATGGCT-CTGGCTTTAAAG GTGAANTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCNCGGCTTGEST: gi|60342258|gb|DN209231.1|DN209231
genomic: GTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|211436987|gb|FL183985.1|FL183985
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: -GCCAACGATGGAGGTCTTCTTGCTGCAATCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|31406262|gb|CD484994.1|CD484994
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|60358719|gb|DN225692.1|DN225692
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|60398909|gb|DN231725.1|DN231725
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|87157582|gb|DY402371.1|DY402371
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|33095636|gb|CF055630.1|CF055630
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: GGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|21432401|gb|BQ547891.1|BQ547891
genomic: GGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: CTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTGEST: gi|33095263|gb|CF055257.1|CF055257
genomic: CTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
EST: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAG GTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
genomic: AGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttt ... gttatggcagGTGAACTCAGTCGGTTCCAACCTGGAGTTTCGATGGCAATTTCACGGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGCTCTTCGCTGCTTAGCAGCAGAAGGTGATGGATATGGGCTTCATGAAGCCAACGATGGAGGTCTTCTTGCTGCAGTCATGGCTGCTGGCTTTAAAGgtaccttttttattctaaagggagaccactgtttgaaatatttcgtgcggtgtttttaaatgatctgttatggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT